PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017856
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 334aa    MW: 36316.4 Da    PI: 7.1145
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017856genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.73.3e-2855166370
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................... 65 
                  g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WL+++    i++l+ +                                   
  Lus10017856  55 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLGQPSKVIDWLIENTSDDIDKLPPLqlphsfgieaasgggghlhqyynsslahmapffdf 152
                  78*************************************************************77777777777777777777777666666666666 PP

          TCP  66 ............ssssa 70 
                                  +
  Lus10017856 153 grpgtsttnntsA---S 166
                  6665554442221...1 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-2556123IPR005333Transcription factor, TCP
PROSITE profilePS5136928.51956114IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEEEGAAKQE DQTSLNHPRT ATAAAPPGGS NRSTTSSQWS AFRNPRIVRV SRTFGGKDRH  60
SKVCTVRGLR DRRIRLSVPT AIQLYDLQDR LGLGQPSKVI DWLIENTSDD IDKLPPLQLP  120
HSFGIEAASG GGGHLHQYYN SSLAHMAPFF DFGRPGTSTT NNTSASSSSG TCGLFDQQQH  180
LNSLYQWGDH HHNQNHYQNQ LPILGLGNNY GHDHHHVSSG GGGGGGANFF LPSSYLALSN  240
NTTSASTSTT SSTSPHDQPT TMLMPPPPQQ YSAYNNQLEM MSSDNHHHQN YQRQQQQLLF  300
QSATTTRPTP HFPFNIFNAD NGHDDNGGGS SGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1961115155Putative transcription factor PCF6
5zkt_B1e-1961115155Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017856
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100178560.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-51TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5