PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10017856 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TCP | ||||||||
Protein Properties | Length: 334aa MW: 36316.4 Da PI: 7.1145 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.7 | 3.3e-28 | 55 | 166 | 3 | 70 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................... 65 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WL+++ i++l+ + Lus10017856 55 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLGQPSKVIDWLIENTSDDIDKLPPLqlphsfgieaasgggghlhqyynsslahmapffdf 152 78*************************************************************77777777777777777777777666666666666 PP TCP 66 ............ssssa 70 + Lus10017856 153 grpgtsttnntsA---S 166 6665554442221...1 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-25 | 56 | 123 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.519 | 56 | 114 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MEEEGAAKQE DQTSLNHPRT ATAAAPPGGS NRSTTSSQWS AFRNPRIVRV SRTFGGKDRH 60 SKVCTVRGLR DRRIRLSVPT AIQLYDLQDR LGLGQPSKVI DWLIENTSDD IDKLPPLQLP 120 HSFGIEAASG GGGHLHQYYN SSLAHMAPFF DFGRPGTSTT NNTSASSSSG TCGLFDQQQH 180 LNSLYQWGDH HHNQNHYQNQ LPILGLGNNY GHDHHHVSSG GGGGGGANFF LPSSYLALSN 240 NTTSASTSTT SSTSPHDQPT TMLMPPPPQQ YSAYNNQLEM MSSDNHHHQN YQRQQQQLLF 300 QSATTTRPTP HFPFNIFNAD NGHDDNGGGS SGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-19 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-19 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10017856 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10017856 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-51 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Lus10017856 |