PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10017824 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TALE | ||||||||
Protein Properties | Length: 180aa MW: 20675.3 Da PI: 6.9791 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.2 | 1.2e-07 | 128 | 161 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Lus10017824 128 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 161 469*****************************87 PP | |||||||
2 | ELK | 26.4 | 1.6e-09 | 82 | 103 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Lus10017824 82 ELKIELKQGFKSRIEDVREEIL 103 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 9.132 | 82 | 102 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 102 | 165 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-10 | 104 | 169 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-16 | 104 | 169 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.15E-12 | 105 | 166 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 109 | 167 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.5E-18 | 122 | 161 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MPNDEFFWVA GMSLGEGTGA TMSDDEDDQS MHMDFSLDPP GLMTSSSTSA VGDPHDMNMM 60 MGFGPLLPTE SERSLMERVR QELKIELKQG FKSRIEDVRE EILRKRRAGK LPGDTTTVLK 120 NWWQQHSKWP YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHSNSQSV TSLKSKRKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-13 | 105 | 161 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 178 | RKRNWHSNSQSVTSLKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible developmental regulator. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10017824 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By wounding; up to 7-fold increase. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008238758.1 | 4e-99 | PREDICTED: homeobox protein HD1 | ||||
Swissprot | P46606 | 6e-91 | HD1_BRANA; Homeobox protein HD1 | ||||
TrEMBL | M5WA76 | 1e-97 | M5WA76_PRUPE; KNOPE7 | ||||
STRING | Lus10017824 | 1e-130 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6348 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 6e-93 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | Lus10017824 |
Publications ? help Back to Top | |||
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