PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10017793 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 241aa MW: 26700.3 Da PI: 10.4107 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 77.8 | 1.8e-24 | 54 | 144 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +f +w e+DeivlL +l++f +k+g++p+++i ++++ vkks++++v sql+eK rLKkKf++ ++ k ++ s++h+qk+f+ls+ iWg Lus10017793 54 QFPWIWGESDEIVLLNALLEF-TKRGVDPFKEIGDLHDPVKKSLNIDVYVSQLTEKAARLKKKFREVAAD----KRKRPSNAHEQKCFDLSNEIWG 144 57789****************.89******************************************9998....7778899**************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.7E-22 | 57 | 144 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MEATPSKSST KSPVSHAVSA SRKRGTETET EAKGTKRKKK ESAAKPSNSE KKQQFPWIWG 60 ESDEIVLLNA LLEFTKRGVD PFKEIGDLHD PVKKSLNIDV YVSQLTEKAA RLKKKFREVA 120 ADKRKRPSNA HEQKCFDLSN EIWGMQASSG DIETGNAPKS SNARRSNGKE KGSSRDGGNG 180 NAVTIEGDAE IKDIVINKGL DMVEGSKRAE FEKRGKDVYF AKLKVFIKQT ELVLMMIRRS 240 * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 21 | 39 | RKRGTETETEAKGTKRKKK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10017793 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10017793 | 1e-175 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66420.1 | 3e-14 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10017793 |