PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017708
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 299aa    MW: 33750.1 Da    PI: 9.8712
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017708genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-10119141426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C+ f+r+G C++Gd+C FaHg
  Lus10017708 119 AVCPEFRRGGGCSRGDNCEFAHG 141
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-4115142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6115145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803116143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-6119143IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8119141IPR000571Zinc finger, CCCH-type
SMARTSM003564.3151174IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.254151175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTTPAASIYS DHHPSSPTAK LPPRKLLVNR NNTTVDFPQL DDMSSLAHFY KHLPCNKSDL  60
LDEEEEDEDP YSSDQFRMYD FKVRRCTRSR SHDWTDCPFA HPGEKARRRD PRKFHYTGAV  120
CPEFRRGGGC SRGDNCEFAH GVFECWLHPS RYRTEACKDG KGCKRKVCFF AHSPRQLRLL  180
PPEKSSPTSR TGGGKINHRH QSCGCLVCRG GGDSSSPTST LIGLSHLSPP LSPSFSSSPP  240
VSPVSHHRPS GFSHRLSKFQ SRYTSYKDVL SELMSSTPPP LLGRRRLRRC RHRLRLQA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017708
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573898.15e-90zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA12e-80C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A1J7G6972e-88A0A1J7G697_LUPAN; Uncharacterized protein
STRINGLus100177080.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-78C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]