PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10017688

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HB-other

Protein Properties

Length: 274aa MW: 31250.1 Da PI: 9.0123

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10017688	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	35	91	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t++qle+Le+ + + yps++ r+ L+++lgL++rq ++WF+ rR k++k Lus10017688 35 KSKRKLKTAYQLEVLEKTYSEVTYPSEAVRAGLSEQLGLSDRQLQMWFCHRRVKDRK 91 679999*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-17	22	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.05	32	92	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-16	32	94	IPR009057	Homeodomain-like
SMART	SM00389	7.2E-16	34	96	IPR001356	Homeobox domain
Pfam	PF00046	2.5E-16	35	91	IPR001356	Homeobox domain
CDD	cd00086	1.06E-13	35	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEDSRRRSSS PPAAGDAEVY QTKNKKTKKP DVENKSKRKL KTAYQLEVLE KTYSEVTYPS 60 EAVRAGLSEQ LGLSDRQLQM WFCHRRVKDR KRQHEDPPSP VEEMEAASEA CRKHSPASAS 120 RSNSLGMDPP SRPWSLSTAE VAVPRNGAHL STVERYYEPR RSVAELRAML FVEEQLEEPM 180 REDGPVLGVE FDPLPPDAFA EPMRTTAIVV HETALARHLG PNMYEQYDLK SIKQPKWLSR 240 DQCSKRRSLH KQQMQTLNPS HKKYSDRSQS DDS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	39	KKTKKPDVENKSKRKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10017688

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088211.1	4e-63	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A067JX12	1e-61	A0A067JX12_JATCU; Uncharacterized protein
STRING	Lus10017688	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15781	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	1e-41	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Lus10017688