PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017641
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 1023aa    MW: 113721 Da    PI: 6.854
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017641genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-23275376199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae+       ++ +++ ++l+ +d++ ++W++k+i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ ++
  Lus10017641 275 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQTPPC-QELIARDLHDNEWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WTEKNQM 369
                  99****************************98555666.59************************************************..8889999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Lus10017641 370 LLGIRRA 376
                  **99997 PP
2Auxin_resp117.11.5e-38401484183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F++++nPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+ S+Wrs+k
  Lus10017641 401 AAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQSSHWRSVK 484
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.11E-48260404IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-41268388IPR015300DNA-binding pseudobarrel domain
CDDcd100174.05E-22274375No hitNo description
PfamPF023621.8E-21275376IPR003340B3 DNA binding domain
SMARTSM010195.9E-24275377IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182275377IPR003340B3 DNA binding domain
PfamPF065073.4E-33401484IPR010525Auxin response factor
PfamPF023096.8E-7903994IPR033389AUX/IAA domain
SuperFamilySSF542771.37E-7904984No hitNo description
PROSITE profilePS5174522.554909993IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1023 aa     Download sequence    Send to blast
MRLPSPGMNQ QAQDGGDSKC LNSELWHACA GPLVSLPNLG SRVVYFPQGH SEQFGFSLRR  60
GSSLVYFAFL NKRVVSTYEF INDYVCRLQL QRCFRLPPLF FFCFLRSFGR RSGVVAATYG  120
RAVVFVCMKA ESVLLLRKWL PMIQLNCESL NCDPLCFVVL GGDSKCLNSE LWHACAGPLV  180
SLPNLGSRVV YFPQGHSEQV AASTNKEVDA QIPNYPSLPP QLICQLHNVT MHSDVETEEV  240
YAQMTLQPLS PQEQKEVYLL PAELGAPSKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV  300
FPPLDYSQTP PCQELIARDL HDNEWKFKHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVI  360
FIWTEKNQML LGIRRANRPQ TVMPSSVLSG DSMHIGLLAA AAHAAATNSR FTIFFNPRAS  420
PSEFVIPLAK YVKAVYHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL DPVRWQSSHW  480
RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPSPFPMR LKRPWPSGMP SFGLKDTDLS  540
INAQLMWLQG LGDQGQSMNF QGFGVNQWLQ PRLDTSIQAL QPDVYQAMAA AALQEMRAVE  600
SSKLGSQSLL QFQPSQIVSN DPTALLQREM LQPLSNLHHS FLQNFQENQA MSQSHQQLQR  660
HPMYNDQLQQ QKLPQEPQLQ SRQVQQPQQP RHQLPSQHQT SNVVSSPSHL TSVNLPQSTS  720
LQSQQLAFSV PVVNPVATGD VSSVHSVMSS MMRDGAPNMF NLKGSNGGGI SSTLLSKQVA  780
DGQHFSPGIA DCALPKVDPM SQSNASEHAS LLPPFPGREY SAYQDATDPQ HNTLFGVNID  840
SSSYMLQHGI ANNIGSESSS LSMPFASTYP NANGCELPLN SDMSTSSCVD ESGYLQSAEN  900
VDQVDPPTGT FVKVHRTGSF GRSLDISAFS SYDELRVELA RLFGLEGQLE DPQRSGWQLV  960
FVDRENDVLL LGDDPWQEFV NSVWYIKILS PVEVQQMGKE GLSSVASIPP QKKLRNATID  1020
DY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-15616150545388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017641
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032738.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLB9H8680.0B9H868_POPTR; Auxin response factor
STRINGLus100176410.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]