PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017554
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 542aa    MW: 61024 Da    PI: 6.1106
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017554genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS395.36.4e-1211705411374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++L+ cA+a++  d ++a  l+  l++++s  g+p+qR+ ay++e+L+arl  s+s++y+al++ +     ss+ ++++ ++++++P+ kf+++ a
  Lus10017554 170 LKQVLIGCAQAIDMVDISKAAGLMHMLEQMVSVCGEPIQRVGAYILEGLRARLELSGSRIYRALKCDSPV---SSDLMTYMGILYQICPYWKFAYMSA 264
                  5799**************************************************************9998...89999999***************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N  I eav+ e r+HiiDf+i qG QW++L+q+La Rp+g+p +RiTgv++++s   +   l+ +gerL+k+A+e++v fef+  +a +  +++ e+L
  Lus10017554 265 NVVIHEAVQYEPRIHIIDFQIAQGSQWIPLIQSLARRPGGAPIIRITGVDDSQSAhaRGGGLHIVGERLSKVAAECNVVFEFHD-TAMEGCEIQREHL 361
                  ***************************************************9988889999***********************.899999******* PP

         GRAS 195 rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  +v+p +Ea++Vnl + lh+++desv++ ++rd++L+lvkslsP++v++veqe+++n+++F  rfle+leyy+a+f+s+++  pr++++ri+ E+++++
  Lus10017554 362 KVEPlREAVVVNLPYVLHHMPDESVNTWNHRDRLLRLVKSLSPRIVTLVEQESNTNTTPFHLRFLETLEYYTAMFESIDVARPRDDKQRISAEQHCVA 459
                  ************************************************************************************************** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r+ivnv+acegaer+erhe l+kWr+r+++aGF+++p+s+++++ ++ +l+ ++ + yrvee++g+l+l+W +r++ + SaWr
  Lus10017554 460 RDIVNVIACEGAERVERHEVLGKWRSRFQMAGFSQYPFSSSVTAAVRDVLKDYDRR-YRVEERDGALYLYWLRRAMGTSSAWR 541
                  ******************************************************66.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.997144522IPR005202Transcription factor GRAS
PfamPF035142.2E-118170541IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MTQSQKHRNS PTIHGFYHQP IKEEDTFSLS QIELLDNNNI FSIVGSQGGG PSISFQNYKD  60
EYFTLESSST TTTTGFIYDS PGVSSSSRSP FSPQGSLSCL TDPHHSPDGS PASGSSYATD  120
PGNVLWQKLR EMEMSLLGPE SENFCFSNES HSLERLDADQ IAEMIPRLDL KQVLIGCAQA  180
IDMVDISKAA GLMHMLEQMV SVCGEPIQRV GAYILEGLRA RLELSGSRIY RALKCDSPVS  240
SDLMTYMGIL YQICPYWKFA YMSANVVIHE AVQYEPRIHI IDFQIAQGSQ WIPLIQSLAR  300
RPGGAPIIRI TGVDDSQSAH ARGGGLHIVG ERLSKVAAEC NVVFEFHDTA MEGCEIQREH  360
LKVEPLREAV VVNLPYVLHH MPDESVNTWN HRDRLLRLVK SLSPRIVTLV EQESNTNTTP  420
FHLRFLETLE YYTAMFESID VARPRDDKQR ISAEQHCVAR DIVNVIACEG AERVERHEVL  480
GKWRSRFQMA GFSQYPFSSS VTAAVRDVLK DYDRRYRVEE RDGALYLYWL RRAMGTSSAW  540
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-541725416375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017554
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040189.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLB9IH450.0B9IH45_POPTR; Uncharacterized protein
STRINGLus100175540.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13