PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017481
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 658aa    MW: 71889.7 Da    PI: 6.5525
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017481genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.41.2e-084104471954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LA+++gLt  qV++WF N R +
  Lus10017481 410 FEHflHPYPKDSDKIMLARQTGLTRGQVSNWFINARVR 447
                  664559******************************88 PP
2BELL130.84.6e-42272343172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai +qi
  Lus10017481 272 ERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAINGQI 343
                  79********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.1E-69195341IPR006563POX domain
PfamPF075265.0E-53201339IPR006563POX domain
PROSITE profilePS5007111.953388451IPR001356Homeobox domain
SMARTSM003895.8E-9391455IPR001356Homeobox domain
CDDcd000862.41E-12391452No hitNo description
SuperFamilySSF466896.84E-17392459IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-28394457IPR009057Homeodomain-like
PfamPF059202.2E-17408447IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MATYYPGANN QREGPPMIYH LPGGGSYSET TPVLTGNMMM YMNAAGSYSD AQQQNNSCID  60
IQSVEGSASS QQEMLANLGG SRVSDHQHDY NTWRDMQSIG GTDASGSILQ GGGQSLQGQG  120
LSLSLGTQIP SGIQMHSIPY RNANQGFTSF LSTTNPSSSS NRDDELRSAE YMQQQVGGYH  180
TQDSGKGDFA QYGMTSIART IPNSKYLKAA QQLLDEVVNV RKALRQPDKE KSQKGNENEM  240
NSSKEGDSGS KNGPSDPQES ASNPVSELSH SERQELQNKL TKLLSMLDEV DRRYKQYYHQ  300
MQIVVSSFDV IAGCGAAKPY TALALQTISR HFRCLRDAIN GQIRSVRKSL GEQETSENSK  360
GVAITRLRYV DQQLRQQRAL QQLGMMQQHT WRPQRGLPEN SVSILRAWLF EHFLHPYPKD  420
SDKIMLARQT GLTRGQVSNW FINARVRLWK PMVEEMYKEE TGDMEMDSNS SSENAARALS  480
KADMRSSEDG GGEEMQQTAS SAATERYSGA QAMEKTDHVH HNMEMAGSSS RAHFQFGPHG  540
DGLTDYGLMK LREEQRPGVV DDCGGLYNDA IVGGSDRFMA AAAAAYQIQE MGRYGSGGGV  600
SLTLGLQHCE GGNLPISGAV HHPGFVPMRG SDHKAGEWSG GGGGGGIFVK IHNFLIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16397454158Homeobox protein Meis1
4xrs_B1e-16397454158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017481
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454646.10.0BEL1-like homeodomain protein 6
TrEMBLA0A2K2AVE80.0A0A2K2AVE8_POPTR; Uncharacterized protein
STRINGLus100174810.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-122BEL1-like homeodomain 6