PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10017353

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 498aa MW: 54989 Da PI: 4.8948

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10017353	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.9	4.2e-32	26	108	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+++ ew+fF++rd+ky++g r+nrat++gyWkatgkd++++s+ +++ +g+kktLvfy+grap+ge+++W+mheyr+ Lus10017353 26 VIKTNDPEWFFFCPRDRKYPNGCRSNRATEAGYWKATGKDRTIKSRksscGSKSIGMKKTLVFYRGRAPRGERSNWIMHEYRA 108 4667888************************************988888888*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.897	1	131	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-37	27	131	IPR003441	NAC domain
Pfam	PF02365	2.1E-16	31	107	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MMLPKSNRIP NISFTSLSRL CAGLSVIKTN DPEWFFFCPR DRKYPNGCRS NRATEAGYWK 60 ATGKDRTIKS RKSSCGSKSI GMKKTLVFYR GRAPRGERSN WIMHEYRATE EDLDGNAPGQ 120 AAFVLCRLFR KPELTKPIGA KNDEMEEQTE YSPSATKSDD ASFDVVQETA NSSGMDLGKQ 180 TDAIVPADSN SYMNSDVEDL TVEANGALDY KEFSYGDLGR LSGDSHSYDI DFGNDLSSFL 240 DGTNEQDAYL TDLLDEVFHN HGGELSFEEA SSRMDSESML EDFNAADCNI YSNVAAKMTQ 300 QEQIGTVSGL SSAQAPFFDR EVGSMNLGDP RDTFVRQDAH YADPFTNTSF GMFHPVENYG 360 SFSDNLVGGT GIKIRTRPPE VRPPSKILIS QGTAPRRLLF QTKLSRGQCR NCVDGEDAMQ 420 SSVTKNQDAE ETNQTRDEQP KEGWVGKLRR RMVRTLSEVG CVSNGKSGSE SAWVIGVTGA 480 AFLVAGTAVE IWRCLWA*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MMLPKSNRIP NISFTSLSRL CAGLSVIKTN DPEWFFFCPR DRKYPNGCRS NRATEAGYWK  60
ATGKDRTIKS RKSSCGSKSI GMKKTLVFYR GRAPRGERSN WIMHEYRATE EDLDGNAPGQ  120
AAFVLCRLFR KPELTKPIGA KNDEMEEQTE YSPSATKSDD ASFDVVQETA NSSGMDLGKQ  180
TDAIVPADSN SYMNSDVEDL TVEANGALDY KEFSYGDLGR LSGDSHSYDI DFGNDLSSFL  240
DGTNEQDAYL TDLLDEVFHN HGGELSFEEA SSRMDSESML EDFNAADCNI YSNVAAKMTQ  300
QEQIGTVSGL SSAQAPFFDR EVGSMNLGDP RDTFVRQDAH YADPFTNTSF GMFHPVENYG  360
SFSDNLVGGT GIKIRTRPPE VRPPSKILIS QGTAPRRLLF QTKLSRGQCR NCVDGEDAMQ  420
SSVTKNQDAE ETNQTRDEQP KEGWVGKLRR RMVRTLSEVG CVSNGKSGSE SAWVIGVTGA  480
AFLVAGTAVE IWRCLWA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-28	33	131	72	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-28	33	131	72	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-28	33	131	72	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-28	33	131	72	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-28	33	131	75	168	NAC domain-containing protein 19
3swm_B	1e-28	33	131	75	168	NAC domain-containing protein 19
3swm_C	1e-28	33	131	75	168	NAC domain-containing protein 19
3swm_D	1e-28	33	131	75	168	NAC domain-containing protein 19
3swp_A	1e-28	33	131	75	168	NAC domain-containing protein 19
3swp_B	1e-28	33	131	75	168	NAC domain-containing protein 19
3swp_C	1e-28	33	131	75	168	NAC domain-containing protein 19
3swp_D	1e-28	33	131	75	168	NAC domain-containing protein 19
4dul_A	1e-28	33	131	72	165	NAC domain-containing protein 19
4dul_B	1e-28	33	131	72	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10017353

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004356.1	1e-107	PREDICTED: uncharacterized protein LOC105110869 isoform X6
TrEMBL	A0A2I4KK92	1e-105	A0A2I4KK92_POPTR; NAC family protein
STRING	Lus10017353	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13625	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	4e-76	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Lus10017353