PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10017229

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 169aa MW: 17967.6 Da PI: 8.8362

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10017229	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	7.1e-06	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F+++ L H++ H Lus10017229 79 FECHYCSRNFPTSQALGGHQNAH 101 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.05E-6	75	107	No hit	No description
Pfam	PF13912	2.3E-7	78	103	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.593	79	106	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MGAERETHDF LNVESFSQLP FIRPSPPPIR LFGSELSICT TAAAAKSVVD KESSPPVAES 60 STTNNTISNG SSSNNNRRFE CHYCSRNFPT SQALGGHQNA HKRERQHAKR AHHHGYVAAT 120 DAPFYAYRTT PAAIAAGHAP FSSYSSWNGG GSASRFYSGG GSVGGSFD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10017229

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024459255.1	7e-45	zinc finger protein 8
TrEMBL	A0A1R3HEU3	2e-43	A0A1R3HEU3_9ROSI; Putative nucleic acid binding protein
STRING	Lus10017229	1e-121	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	2e-31	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Lus10017229