PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017067
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 360aa    MW: 38964.1 Da    PI: 5.2449
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017067genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.98.5e-33192250159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+ver ++dp vv++tYeg+H h+
  Lus10017067 192 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERLHDDPAVVVTTYEGQHVHP 250
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-34177252IPR003657WRKY domain
SuperFamilySSF1182904.18E-29184252IPR003657WRKY domain
PROSITE profilePS5081132.409187252IPR003657WRKY domain
SMARTSM007741.3E-38192251IPR003657WRKY domain
PfamPF031062.0E-26193250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAKSSDQKNP AANSLPYMMT SSSGQLEEMI QSGSAFASPG GFFFDTPMMT PANNGFSGFM  60
ELLDVNGVGG GQDFSGYSSS LFDLFQTPMF PLSTVPDLAM ESLSSEVVNN PATPNSSSIS  120
SSSNEAGNSN YNNNKVGLKA EEGILEEEDG GEEEDEEKNS TNKKQLKAKK KPQKKQREPR  180
FAFMTKSEVD HLDDGYRWRK YGQKAVKNSP YPRSYYRCTS AGCGVKKRVE RLHDDPAVVV  240
TTYEGQHVHP SPITPRGSLI GSGGFGSVNY LPDQSQYQLQ QHAYNMYTSM PSLHVSTSSG  300
TAGTSTPPGT TTSSPCSASF LNINQSPAAN FLRDNGLLQD IVPTGTKVVV EPKEEEQRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-29182252777Probable WRKY transcription factor 4
2lex_A5e-29182252777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017067
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314962.21e-82probable WRKY transcription factor 48
SwissprotQ9FGZ43e-53WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A3Q9EF092e-81A0A3Q9EF09_POPTO; WRKY DNA-binding protein 48
STRINGLus100170670.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.18e-48WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]