PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10016887 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 266aa MW: 30040.1 Da PI: 4.6576 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 25.8 | 1.3e-08 | 114 | 170 | 4 | 60 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel 60 Ll+ A+ v++g + +a lL l++++g+p++R+++yf +AL+ ++++++ ++ Lus10016887 114 YLLSSADNVAKGRFDQALGLLRLCDSLSTSQGNPVERVVHYFSKALRVKISKETGTV 170 6999***********************************************965554 PP | |||||||
2 | GRAS | 26 | 1.1e-08 | 204 | 263 | 240 | 298 |
GRAS 240 vvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 + + e++ +s+ F+ rf+e l +y alfd l++ + +++ r++vE +l++ i++ v Lus10016887 204 TQAKVEVNWvSSPHFASRFVEMLFHYGALFDGLDTCTGDNERGRAVVESTYLSKLIMKDV 263 5567788888999*****************************************998754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 4.4E-6 | 114 | 170 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-6 | 204 | 263 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGYSHHHLQH DERFFLDSDM HTFDHVEVDD DDQWSLQHGR SLELDDNTDD DDDDSDEWPV 60 LDVSSTHPHL ETEESSTLST EDVIRLAGMR MIHMSSNNHG LSDRDVRNVA LTGYLLSSAD 120 NVAKGRFDQA LGLLRLCDSL STSQGNPVER VVHYFSKALR VKISKETGTV DQYLIISDNH 180 NILRPDDDMS LVHSRRISQH IAATQAKVEV NWVSSPHFAS RFVEMLFHYG ALFDGLDTCT 240 GDNERGRAVV ESTYLSKLIM KDVVE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10016887 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10016887 | 0.0 | (Linum usitatissimum) |
Link Out ? help Back to Top | |
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Phytozome | Lus10016887 |