PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016790
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 460aa    MW: 50651.1 Da    PI: 6.7575
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016790genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-091441811954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Lus10016790 144 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 181
                  664559******************************88 PP
2BELL963.3e-3118721872
         BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                 +Vd+rY++y+eq+q+v++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkdaia q+
  Lus10016790 18 KVDRRYNHYCEQMQMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAIAAQL 72
                 7***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.0E-16170IPR006563POX domain
PfamPF075261.8E-26769IPR006563POX domain
PROSITE profilePS5007112.568122185IPR001356Homeobox domain
CDDcd000864.22E-13125186No hitNo description
SMARTSM003891.3E-9125189IPR001356Homeobox domain
SuperFamilySSF466892.1E-17126192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-29128191IPR009057Homeodomain-like
PfamPF059202.0E-18142181IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MPTAPLSSSD RMEHQRRKVD RRYNHYCEQM QMVVNSFDLV MGYGAAVPYT ALAQKAMSRH  60
FRCLKDAIAA QLKQSCEMLG EKDSAGAGGG AGITRGETPR LKALEQSLRQ QRAFHQMGMM  120
EQEAWRPQRG LPERSVNILR AWLFEHFLHP YPSDADKHLL ARQTGLSRNQ VSNWFINARV  180
RLWKPMIEDM YQQETKEADD DTSQDNRAHD QQADVQTSSQ TPPSPTTTVD MLSSAGXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXQA DDLQPTSKPN PSQTTTVAML  300
SSAVGTAASI RSGIGDENDP SSSSLMVINR QCFSENQAST TTTTTTTPTT TNINTTGATM  360
MDMPFHHDFA DDPTCHRRAG ISADYAGTSV GGHHHVSAHD HTLIGPNTII TTAPPMQIRY  420
GTTAAAAAGD VSLTLGLRHA GNMPEKASST FSIRDFGDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-17131188158Homeobox protein Meis1
4xrs_B7e-17131188158Homeobox protein Meis1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1R3INN91e-126A0A1R3INN9_9ROSI; Uncharacterized protein
STRINGLus100167900.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-118BEL1-like homeodomain 2