PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016732
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LFY
Protein Properties Length: 422aa    MW: 47732.3 Da    PI: 7.6911
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016732genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY608.11.8e-18513991386
      FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap..........leaaaaaaarklr.............eleelfkayGvryltvakiaelGftv 75 
                  mdpeaf+aslfkwdpr++aaa+++r ++++ v  a+          +++aaaa                   +le +f++yG+ry+t+akiaelGft+
  Lus10016732   1 MDPEAFTASLFKWDPRTVAAANNNRQQQQQLVDVAAppppaaaiqqQQMAAAA-----AvlamrggpvrdmgGLEGFFQSYGIRYYTIAKIAELGFTM 93 
                  9***************9996655444433333221123445554221112222.....12345599999999************************** PP

      FLO_LFY  76 stLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeael 173
                   tL++mk++el+++m+ +s+ifr++l vGer+Gikaavraerrrl++ +  + r+    + + t+ldalsqeglsee++q+ekea gs+ e +g  + 
  Lus10016732  94 RTLLEMKEDELEEMMNNVSHIFRWELSVGERFGIKAAVRAERRRLDDLD--RSRH---PHSSDTTLDALSQEGLSEERMQQEKEAGGSTWEAVGGGQR 186
                  ***********************************************88..4444...3455578********************9998777766666 PP

      FLO_LFY 174 vaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiak 271
                  + +++++++++++k++++ +  ++++++  +ed+d+++ +++++++   +g erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL qvq++ak
  Lus10016732 187 KLMKHNQQQQRRRKHKQQLEDDHHHNNNDDQEDDDDDDYNNNNSSNVVVSGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLFQVQSMAK 284
                  6666555545444443333333334444455677777777777888889999********************************************** PP

      FLO_LFY 272 erGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWY 369
                  erGekcP+kvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasna+rr fkergenvGawrqacykplv+ia r+gwdida+fnahprLsiWY
  Lus10016732 285 ERGEKCPSKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNAMRRVFKERGENVGAWRQACYKPLVSIAGRRGWDIDAIFNAHPRLSIWY 382
                  ************************************************************************************************** PP

      FLO_LFY 370 vPtkLrqLChlerskas 386
                  vPtkLrqLCh+er+++s
  Lus10016732 383 VPTKLRQLCHAERNTTS 399
                  *************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016989.6E-1871397IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDPEAFTASL FKWDPRTVAA ANNNRQQQQQ LVDVAAPPPP AAAIQQQQMA AAAAVLAMRG  60
GPVRDMGGLE GFFQSYGIRY YTIAKIAELG FTMRTLLEMK EDELEEMMNN VSHIFRWELS  120
VGERFGIKAA VRAERRRLDD LDRSRHPHSS DTTLDALSQE GLSEERMQQE KEAGGSTWEA  180
VGGGQRKLMK HNQQQQRRRK HKQQLEDDHH HNNNDDQEDD DDDDYNNNNS SNVVVSGGER  240
QREHPFIVTE PGEVARGKKN GLDYLFHLYE QCRDFLFQVQ SMAKERGEKC PSKVTNQVFR  300
YAKKAGASYI NKPKMRHYVH CYALHCLDEE ASNAMRRVFK ERGENVGAWR QACYKPLVSI  360
AGRRGWDIDA IFNAHPRLSI WYVPTKLRQL CHAERNTTSA SASASASAAA STSAPVNHLP  420
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1102374142179PROTEIN LEAFY
2vy2_A1e-1102374142179PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016732
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023902312.10.0floricaula/leafy homolog
SwissprotO485591e-177UNI_PEA; Protein UNIFOLIATA
TrEMBLM1LEY10.0M1LEY1_9ROSI; LEAFY-like protein
STRINGLus100167320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-107floral meristem identity control protein LEAFY (LFY)