PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016682
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 473aa    MW: 52754.6 Da    PI: 6.6936
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016682genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.5e-29273332159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg +WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+++d +++++tYeg+Hnh+
  Lus10016682 273 MNDGGQWRKYGQKIAKGNPCPRAYYRCTVAnACPVRKQVQRCQDDMSILITTYEGTHNHP 332
                  589**************************989***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-31258334IPR003657WRKY domain
SuperFamilySSF1182909.68E-27266334IPR003657WRKY domain
PROSITE profilePS5081128.656268334IPR003657WRKY domain
SMARTSM007746.1E-34273333IPR003657WRKY domain
PfamPF031064.0E-26274332IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDHNNDREHR RQKQQAPDSK VAAAMELDQE QPPDDDDDDD QNSSIDQLSN NYLQDTNNNK  60
MDDQQLLCGL ETEMRGMREE NRLLREVVEK TAKDYYRLQM KLTTLLLHQH KNSYCTPDSQ  120
EDPQLYLSLG DQKVVVDDDD RHDGEEGAVN NKPSSKLKRR VIDDDDDELG LSLKLQTTPL  180
SRHHQQQEED EDKYKVVDSS GTGKSSNYNT VELQRINHHH HTLDLDLLSP STSNINAAAH  240
LSATTAPCSK SPSSPPNRKA RVSVRARCQY STMNDGGQWR KYGQKIAKGN PCPRAYYRCT  300
VANACPVRKQ VQRCQDDMSI LITTYEGTHN HPMPPGTTGA ATSFMLLDSS AADTSPPQIS  360
LSAAPTTANF IFPFNQQYQQ MTFNSTTPAA RRHPTLPTTI LNSSSMHRTT SAPSRFSVVD  420
GELADNVSAA IAADPKFKAA GGGRHRTSPP FHRSLLKKLL LLLLQQLPLL PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22260336176WRKY transcription factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016682
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100166820.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-52WRKY DNA-binding protein 9