PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016596
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 540aa    MW: 59585.4 Da    PI: 5.7006
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016596genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.91.4e-1361685392374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +e L +cA+++++gd+  +++l+a+l+ ++s +g+p+qRl ay++e+L arla+s+s +ykal+++e +   s e l++++l++e++P++kf+++ aN
  Lus10016596 168 REGLCTCAQFLEDGDMYTVDWLIAELRRMVSVSGEPIQRLGAYVVEGLVARLASSGSAIYKALRCKEPA-PASMELLSYMHLLYEICPYFKFGYMSAN 264
                  6789****************************************************************8.5789999********************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   aI ea++ e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++++s   +   l  +g+rL+ +A++++vpfef+  +    +++++e+L+
  Lus10016596 265 GAIAEAMKDENRIHIIDFQIAQGTQWITLIQALAARPGGPPHIRITGIDDSTSAyaRGGGLDMVGKRLTMLAQQCKVPFEFRS-AGVPASEIQVENLK 361
                  **************************************************998899999************************.899*********** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++pgEa+aVn++l lh+++desv ++++rd++L+lvk+lsPkvv +veqe+++n+++Fl+rf+e+l+yysa+f+s++++lpre++eri+vE+++l+re
  Lus10016596 362 IQPGEAIAVNFALVLHHMPDESVGTQNHRDRLLRLVKGLSPKVVALVEQESNTNTAPFLARFVETLNYYSAIFESIDVTLPREHKERINVEQHCLARE 459
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +vn++acegaer+erhe l+kW++r+ +aGFkp+pls+++++++++ll +++s+ yr+ee++g+l+lgW+dr Lvs +aWr
  Lus10016596 460 VVNIIACEGAERVERHELLGKWKSRIAMAGFKPYPLSSYVNETIRTLLGNYSSK-YRLEEKDGALYLGWMDRDLVSSCAWR 539
                  ****************************************************88.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.315141520IPR005202Transcription factor GRAS
PfamPF035144.7E-134168539IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MQASQNNMFA GGSGLFFNQP LQDKESYCWS CIQNVPHYPC SEVDKTHLSA TTCQQHCTVE  60
SSSGTGGSAA HNSPSATSLS TNESGVSQHN SHSYPSDVHD SPDQSSGSPT SEFYVTHKLR  120
ELETAMLGPD SDILDAFNDI IPTGGNQIIT EADKWKFLGE IISRGDLREG LCTCAQFLED  180
GDMYTVDWLI AELRRMVSVS GEPIQRLGAY VVEGLVARLA SSGSAIYKAL RCKEPAPASM  240
ELLSYMHLLY EICPYFKFGY MSANGAIAEA MKDENRIHII DFQIAQGTQW ITLIQALAAR  300
PGGPPHIRIT GIDDSTSAYA RGGGLDMVGK RLTMLAQQCK VPFEFRSAGV PASEIQVENL  360
KIQPGEAIAV NFALVLHHMP DESVGTQNHR DRLLRLVKGL SPKVVALVEQ ESNTNTAPFL  420
ARFVETLNYY SAIFESIDVT LPREHKERIN VEQHCLAREV VNIIACEGAE RVERHELLGK  480
WKSRIAMAGF KPYPLSSYVN ETIRTLLGNY SSKYRLEEKD GALYLGWMDR DLVSSCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-6619053926375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014635.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_011014636.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1X9QM520.0A0A1X9QM52_9ROSI; Phytochrome A signal transduction 1
STRINGLus100165960.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]