PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016595
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 562aa    MW: 60571.5 Da    PI: 6.793
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016595genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31235292260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers  d++++ei+Y+g+H+h+k
  Lus10016595 235 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSY-DGQITEIIYKGTHDHPK 292
                  8****************************************.***************85 PP

2WRKY106.31.6e-33398456159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Lus10016595 398 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 456
                  59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-27229293IPR003657WRKY domain
PROSITE profilePS5081122.848229293IPR003657WRKY domain
SuperFamilySSF1182906.41E-25230293IPR003657WRKY domain
SMARTSM007741.1E-32234292IPR003657WRKY domain
PfamPF031067.2E-24235291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37383458IPR003657WRKY domain
SuperFamilySSF1182901.96E-29390458IPR003657WRKY domain
PROSITE profilePS5081138.825393458IPR003657WRKY domain
SMARTSM007743.1E-39398457IPR003657WRKY domain
PfamPF031063.3E-26399456IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MDTTSSTTSS STPDASDSND FRLPAPPASA CDSSDHRPGT CAASGGARYK LMSPAKLPIS  60
RSPCITIPPG LSPTSFLESP VLLSNVKAEP SPTTGSFMNP QAAHSSFLST PYSAPAVSSD  120
TFGQRASSFF EFRPPSIANM TSADMNNQRT DQSVRIQGTS QSQFQPFSSL ASPKAEMIAS  180
SNELSLTPRH LVSSEDTGPA EIETDESNQI GNSNSGIQAS QYDLKGGTVN SATSDDGYNW  240
RKYGQKHVKG SEFPRSYYKC THPNCEVKKL FERSYDGQIT EIIYKGTHDH PKPQPSRRYT  300
AGTLLSVQEE RSDKILSGRD EKSSGAYSQL SNTSEPNGTP DLSPVTAIDD IPEGTEEDDD  360
PLSKRRRMDI GSFDVTPVVK PIREPRVVVQ TLSEVDILDD GYRWRKYGQK VVRGNPNPRS  420
YYKCTNAGCP VRKHVERASH DPKAVITTYE GKHNHDVPAA KNSSHEAAAN AMSGPSRFRS  480
NESDTISLGL GVGRGSAAEH GQSSGSSLSK VANYYGILNG GMNQYVSSRQ APNEGHSVEL  540
EALNHSSYPY PPNVGRLLTG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37235459878Probable WRKY transcription factor 4
2lex_A1e-37235459878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016595
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070967.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLM9TMC30.0M9TMC3_JATCU; WRKY transcription factor 09
STRINGLus100165950.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein