PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10016595 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 562aa MW: 60571.5 Da PI: 6.793 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.5 | 2.1e-31 | 235 | 292 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers d++++ei+Y+g+H+h+k Lus10016595 235 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSY-DGQITEIIYKGTHDHPK 292 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.3 | 1.6e-33 | 398 | 456 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Lus10016595 398 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 456 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.4E-27 | 229 | 293 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.848 | 229 | 293 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-25 | 230 | 293 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-32 | 234 | 292 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.2E-24 | 235 | 291 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-37 | 383 | 458 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-29 | 390 | 458 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 393 | 458 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 398 | 457 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-26 | 399 | 456 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MDTTSSTTSS STPDASDSND FRLPAPPASA CDSSDHRPGT CAASGGARYK LMSPAKLPIS 60 RSPCITIPPG LSPTSFLESP VLLSNVKAEP SPTTGSFMNP QAAHSSFLST PYSAPAVSSD 120 TFGQRASSFF EFRPPSIANM TSADMNNQRT DQSVRIQGTS QSQFQPFSSL ASPKAEMIAS 180 SNELSLTPRH LVSSEDTGPA EIETDESNQI GNSNSGIQAS QYDLKGGTVN SATSDDGYNW 240 RKYGQKHVKG SEFPRSYYKC THPNCEVKKL FERSYDGQIT EIIYKGTHDH PKPQPSRRYT 300 AGTLLSVQEE RSDKILSGRD EKSSGAYSQL SNTSEPNGTP DLSPVTAIDD IPEGTEEDDD 360 PLSKRRRMDI GSFDVTPVVK PIREPRVVVQ TLSEVDILDD GYRWRKYGQK VVRGNPNPRS 420 YYKCTNAGCP VRKHVERASH DPKAVITTYE GKHNHDVPAA KNSSHEAAAN AMSGPSRFRS 480 NESDTISLGL GVGRGSAAEH GQSSGSSLSK VANYYGILNG GMNQYVSSRQ APNEGHSVEL 540 EALNHSSYPY PPNVGRLLTG P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-37 | 235 | 459 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-37 | 235 | 459 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10016595 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012070967.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
Swissprot | Q93WV0 | 0.0 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | M9TMC3 | 0.0 | M9TMC3_JATCU; WRKY transcription factor 09 | ||||
STRING | Lus10016595 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3946 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10016595 |