PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016521
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 763aa    MW: 85617.2 Da    PI: 5.984
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016521genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.13.6e-1143877591373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL +cA+a+s++d + a++l+ ++++++sp gd  qRla++f++AL+arla++++++y al++ +ts    ++ l+a++++  ++P+ k++ + a
  Lus10016521 387 LRTLLSTCAQAISTDDRRTANELMRQIRQHSSPFGDGSQRLAHCFANALEARLAGNGTQIYIALSADKTS---AADMLKAYQAYITACPFNKVAIIFA 481
                  5789*********************************************************999999998...9************************ PP

         GRAS  99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  Nq I+ a++ +  ++vHiiDf+i +G+QWpa+++ L++Rp+gpp+lRiTg++ p+sg    e++++tg+rLak++e+ +vpfe+n+ +ak++e+++l+
  Lus10016521 482 NQSIMHAASDAnaSTVHIIDFGILYGFQWPAFIHRLSKRPGGPPTLRITGIELPQSGfrPGERVQATGRRLAKYCERHNVPFEYNA-IAKKWENIQLD 578
                  ********9887799*****************************************9*****************************.7********** PP

         GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                  eL++++gE laVn+ ++ ++llde+v ++s+rd+vL+l++  +P+++v++  + ++n++ F++rf e+l ++s+lfd+l+++++re++ r+k E+e+ 
  Lus10016521 579 ELKINKGEFLAVNCLFRGKNLLDETVLVSSPRDAVLRLIRMKNPDIFVHAIMNGSYNAPFFMTRFRESLFHFSSLFDMLDTNMGREDQMRMKFEKEFY 676
                  ************************************************************************************************** PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  gre+ nv aceg+er+er et+++W+ r ++aG+k++pl+  ++k  k+ +r  + + + v+e+ ++l++gWk+r +++ SaW
  Lus10016521 677 GREAINVMACEGSERVERPETYKQWQVRSTRAGMKQLPLDPVMMKRLKCKVRVKYHEDFVVNEDGEWLLQGWKGRVIYASSAW 759
                  ****************************************************999899************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.468361740IPR005202Transcription factor GRAS
PfamPF035141.2E-111387759IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MDSEFIGSSG PTNRFTFADQ PLFPDLSAAN GFRFNTSSSA MDFGGNFMKD NSLTLTDLDA  60
SNFTQSSPEG DSPTDDNEFG DTVLKYINQM LMEEDMEQKP CMFHDSLPVQ AAEKSLYNVI  120
GEKYPPPSSP AYSSSYGDQF LVDSPGNESS YSVGSDFGGS SSSTGNSTSS IDVHWNNELL  180
GDSKARFMQM PLPTDFVFQS PPLSRQKIER VSNSNGNVDD VVMSSYGGNF AMPNFFSGSE  240
LELQFKRGVE EANKFLPKVS PLVIDLENRN FTPKLEVAVK AEREEENDLP YLKVKKNHDR  300
GDDDFKEERS NKQSAVYVDE SELSEMFDKL LVCNGGKEQE NPSCIHNYDS PENVAKCSQK  360
KANRGSNGNN KGRAKRQGSK KDEVVDLRTL LSTCAQAIST DDRRTANELM RQIRQHSSPF  420
GDGSQRLAHC FANALEARLA GNGTQIYIAL SADKTSAADM LKAYQAYITA CPFNKVAIIF  480
ANQSIMHAAS DANASTVHII DFGILYGFQW PAFIHRLSKR PGGPPTLRIT GIELPQSGFR  540
PGERVQATGR RLAKYCERHN VPFEYNAIAK KWENIQLDEL KINKGEFLAV NCLFRGKNLL  600
DETVLVSSPR DAVLRLIRMK NPDIFVHAIM NGSYNAPFFM TRFRESLFHF SSLFDMLDTN  660
MGREDQMRMK FEKEFYGREA INVMACEGSE RVERPETYKQ WQVRSTRAGM KQLPLDPVMM  720
KRLKCKVRVK YHEDFVVNED GEWLLQGWKG RVIYASSAWI PA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-513687611380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016521
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021647651.10.0scarecrow-like protein 14 isoform X3
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2C9WLQ00.0A0A2C9WLQ0_MANES; Uncharacterized protein
STRINGLus100165210.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]