PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10016519

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 339aa MW: 39367 Da PI: 8.8359

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10016519	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	332.3	9e-102	2	332	42	374
GRAS 42 aayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegp 139 a+yf++AL++rla+ + y + ++ ++ ++e l+a+++f + +P+ ++s++ aN+++ + +e+ + +HiiDf+i +G+QWp+L+q L++Rp+gp Lus10016519 2 AHYFANALETRLAGAATPKYT-VDVKGKT--PMAEILKAYQMFLNSCPFKRMSNFFANRTVFNLAENVSSLHIIDFGILYGFQWPCLIQRLSERPGGP 96 9***********5555553.3333333..39************************************************************* PP GRAS 140 pslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235 p+lRiTg++ p++g +e++eetg+rLa+++e+++vpf++++ +a+++e++++e+L+++p+E+++Vn+ +++ +l+d++v+++s+rd+vL l+ +++ Lus10016519 97 PKLRITGIDFPQPGfrPTERVEETGRRLARYCERFNVPFDYKA-IAQKWETIKYEDLNINPDETTVVNCLYRMRNLPDDTVAVDSARDSVLGLIHKVR 193 *********9*************************.7************************************************* PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 P+v+++ + ++n++ F +rf eal +ys+lfd++ea+l re+e+r Ere+ gr+i+nvvaceg+er+er et+++W+ r ++aGF+++pl+e++ Lus10016519 194 PEVFIHGIANGSYNAPFFTTRFREALFHYSSLFDMFEATLQREDEHRLLFEREMYGRDIMNVVACEGSERVERPETYKQWQTRNTRAGFRQLPLNETI 291 ********************************************************************************************** PP GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 k++++ ++ +++ + v+ + ++++gWk+r ++ +S+W+ Lus10016519 292 LKKVRSTVKSEYDKDFGVDADGRWMLQGWKGRIIYGLSVWK 332 ********999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.606	1	312	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-99	2	332	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MAHYFANALE TRLAGAATPK YTVDVKGKTP MAEILKAYQM FLNSCPFKRM SNFFANRTVF 60 NLAENVSSLH IIDFGILYGF QWPCLIQRLS ERPGGPPKLR ITGIDFPQPG FRPTERVEET 120 GRRLARYCER FNVPFDYKAI AQKWETIKYE DLNINPDETT VVNCLYRMRN LPDDTVAVDS 180 ARDSVLGLIH KVRPEVFIHG IANGSYNAPF FTTRFREALF HYSSLFDMFE ATLQREDEHR 240 LLFEREMYGR DIMNVVACEG SERVERPETY KQWQTRNTRA GFRQLPLNET ILKKVRSTVK 300 SEYDKDFGVD ADGRWMLQGW KGRIIYGLSV WKPVDKDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-43	1	332	43	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10016519

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021653838.1	0.0	scarecrow-like protein 14 isoform X2
Swissprot	Q9XE58	1e-152	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A067L1C5	0.0	A0A067L1C5_JATCU; GRAS05 protein
STRING	Lus10016519	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-154	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Lus10016519

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]