PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10016368

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 144aa MW: 16314.8 Da PI: 10.64

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10016368	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.9	1.2e-09	61	105	7	51
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 rr NR+A r++R++Kka ++ Lee vk+L N++L el++ Lus10016368 61 KRRPLGNRVAVRKYRKKKKAHTASLEEQVKKLRVLNQELVTELQR 105 456688**********************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07716	5.5E-12	56	110	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-11	56	122	No hit	No description
SMART	SM00338	9.1E-8	57	122	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.726	57	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.94E-8	61	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MVEISRTCIH THTCNPPGPN ATTHSHTCCH THTKVLIIPP GTTLEKQNST TYNRNSKKTT 60 KRRPLGNRVA VRKYRKKKKA HTASLEEQVK KLRVLNQELV TELQRQAVLE SEVVRLRGLL 120 VDFRVKIDHL ELESCPFGNA RSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	78	KRRPLGNRVAVRKYRKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10016368

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008788583.1	3e-42	basic leucine zipper 23-like
Refseq	XP_017698050.1	3e-42	basic leucine zipper 23-like
Swissprot	Q8VY76	6e-39	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	A0A2H3XTL3	8e-41	A0A2H3XTL3_PHODC; basic leucine zipper 23-like
TrEMBL	A0A2N9INI7	1e-40	A0A2N9INI7_FAGSY; Uncharacterized protein
STRING	Lus10016368	1e-101	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2567	32	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	3e-22	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10016368

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]