PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016282
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 1178aa    MW: 130385 Da    PI: 5.0488
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016282genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.11.2e-2576134159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg  WrKY qK+vk s++prsYY+C++agC+v k ++r+++dp +v++tY+geHnh+
  Lus10016282  76 LDDGVLWRKYDQKHVKRSPHPRSYYQCAYAGCTVVKSLQRDSDDPAFVITTYKGEHNHD 134
                  58********************************************************7 PP

2WRKY86.13.2e-27223280259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKY qK++kg+ +prsYYrCt+ gC++kk+ver+ ++p++v++ Y+g Hnh+
  Lus10016282 223 NDGYHWRKYHQKVIKGNAYPRSYYRCTYVGCSAKKHVERDLDNPDYVITSYKGVHNHD 280
                  7********************************************************6 PP

3WRKY76.92.4e-24384442159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +dDgy+WrKYGqK v gs + r+YY+Ct++ Cp++k v r+++dp++v+++ +++H h 
  Lus10016282 384 VDDGYRWRKYGQKAVSGSAYWRGYYKCTHTACPARKTVYRDSDDPEFVITKVQNDHSHA 442
                  59*******************************************************96 PP

4SBP33.31.3e-1097210082864
                   HT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-ST CS
          SBP   28 skapvvlvsgleqrfCqqCsrfhelsefDeekrsCrr 64  
                    k  + lv +++qrfCqqCs++h l ef e+  +C r
  Lus10016282  972 EKDGSSLVGKVMQRFCQQCSKYHVLGEFGEKESTCVR 1008
                   5667788999*********************999965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-2763135IPR003657WRKY domain
SuperFamilySSF1182902.88E-2368135IPR003657WRKY domain
PROSITE profilePS5081127.25571136IPR003657WRKY domain
SMARTSM007744.1E-2776135IPR003657WRKY domain
PfamPF031061.3E-2077134IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.1E-25216280IPR003657WRKY domain
SuperFamilySSF1182901.57E-23220281IPR003657WRKY domain
SMARTSM007746.1E-30222281IPR003657WRKY domain
PROSITE profilePS5081126.98223282IPR003657WRKY domain
PfamPF031062.6E-21223280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-25370443IPR003657WRKY domain
SuperFamilySSF1182902.88E-21377442IPR003657WRKY domain
PROSITE profilePS5081125.189379444IPR003657WRKY domain
SMARTSM007741.1E-24384443IPR003657WRKY domain
PfamPF031065.2E-19385441IPR003657WRKY domain
SuperFamilySSF520588.5E-23632853IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.0E-17655782IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS511419.9649401020IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-89721009IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.3E-79761006IPR004333Transcription factor, SBP-box
PfamPF031101.4E-69791009IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1178 aa     Download sequence    Send to blast
MADSASLLNE DDIEGVEHFG FPSARVDSTG HEVLQEKEDD DGSTLAGSRR KTEKSDDSAA  60
GKPDVSFRTK SEVDVLDDGV LWRKYDQKHV KRSPHPRSYY QCAYAGCTVV KSLQRDSDDP  120
AFVITTYKGE HNHDVVTPSA KILDHHGTTG PQTTGDSFST GSNYSGITGL DNSGVRNLLS  180
DSSRIVSTTS GSAIEEEEHG NNVLFPSLYR EKDITSRTKV KDNDGYHWRK YHQKVIKGNA  240
YPRSYYRCTY VGCSAKKHVE RDLDNPDYVI TSYKGVHNHD FATPRAKCIG HVPLEPLTIG  300
DSSCEKKTKT IGDTLCSGSD NSGLTSLDLR GAENRRSDSL RIGSSKGDSI VEEEGHGNND  360
KFRKCRREKN KVITLRTKSK VDLVDDGYRW RKYGQKAVSG SAYWRGYYKC THTACPARKT  420
VYRDSDDPEF VITKVQNDHS HAAVNALDAV VRPAFSSGAE YETSSFMSLN LGIGKTTAAE  480
TRHEGNVNVM KTDEVKFGVE FSAYDGYSSF DNPFTESGYW NNDEKLSSML WSPFETGFDY  540
IGTALSPFDF GIKTSVADKP MPQPPSSYLL RSGSEESGAI ILDLGVGLSS SAETTCNGKQ  600
EAEKVEGRST LAMAESKWLQ FQESYIYMEE VYLSRSPSPS YLCAHNLISI FLPRCNVEHL  660
WNGGEQIPDL SKAQKLESLM LEGCLNLVSV SSVQHLTNLQ NLNLKRCRSL KGLPSLVKLK  720
LLKTLNLSHC SNLRRLPPSL GCLSSLCELN LRNCVKLDYL PQGVVKLMRS LETLNVSGCS  780
SLWKSIGADD DAALPLPLEN LPSTSSISMS HSFEDVNLDP QPIENVQVEA EGKCASIEDS  840
PPQELPLDLS DIWRKNPLES DDVAAFMTTQ LIDLLPSGSR IREWLLPNMD SSSNACSSPP  900
EDTAFHARNS IQNEGSDDGK SMMEAVREKE DELVGNVKHE DDPESVGKSL QIIGAEFVCH  960
QVEDYDVNPS SEKDGSSLVG KVMQRFCQQC SKYHVLGEFG EKESTCVRNK RPNDCSIDTA  1020
ESDEKRMLVL KRTRMSYDDT VKTDLALHSL ELLEEYLTMS LEDLENANAL SNIESALRAM  1080
IEHYSSSSSN LYDKATVESM LAELKQSVVE TVFSMQKAKS ESAVVAGKMT ELDTDLGHGQ  1140
LHLSLLDAEM SLILEEEENI EAEIQRLMEK KGKLVLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2167441876Probable WRKY transcription factor 4
2lex_A3e-2167441876Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016282
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100162820.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.17e-37WRKY DNA-binding protein 3