PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10016282 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 1178aa MW: 130385 Da PI: 5.0488 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 81.1 | 1.2e-25 | 76 | 134 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg WrKY qK+vk s++prsYY+C++agC+v k ++r+++dp +v++tY+geHnh+ Lus10016282 76 LDDGVLWRKYDQKHVKRSPHPRSYYQCAYAGCTVVKSLQRDSDDPAFVITTYKGEHNHD 134 58********************************************************7 PP | |||||||
2 | WRKY | 86.1 | 3.2e-27 | 223 | 280 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKY qK++kg+ +prsYYrCt+ gC++kk+ver+ ++p++v++ Y+g Hnh+ Lus10016282 223 NDGYHWRKYHQKVIKGNAYPRSYYRCTYVGCSAKKHVERDLDNPDYVITSYKGVHNHD 280 7********************************************************6 PP | |||||||
3 | WRKY | 76.9 | 2.4e-24 | 384 | 442 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYGqK v gs + r+YY+Ct++ Cp++k v r+++dp++v+++ +++H h Lus10016282 384 VDDGYRWRKYGQKAVSGSAYWRGYYKCTHTACPARKTVYRDSDDPEFVITKVQNDHSHA 442 59*******************************************************96 PP | |||||||
4 | SBP | 33.3 | 1.3e-10 | 972 | 1008 | 28 | 64 |
HT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-ST CS SBP 28 skapvvlvsgleqrfCqqCsrfhelsefDeekrsCrr 64 k + lv +++qrfCqqCs++h l ef e+ +C r Lus10016282 972 EKDGSSLVGKVMQRFCQQCSKYHVLGEFGEKESTCVR 1008 5667788999*********************999965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-27 | 63 | 135 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-23 | 68 | 135 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.255 | 71 | 136 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-27 | 76 | 135 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-20 | 77 | 134 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.1E-25 | 216 | 280 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-23 | 220 | 281 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-30 | 222 | 281 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.98 | 223 | 282 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-21 | 223 | 280 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.1E-25 | 370 | 443 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-21 | 377 | 442 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.189 | 379 | 444 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-24 | 384 | 443 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-19 | 385 | 441 | IPR003657 | WRKY domain |
SuperFamily | SSF52058 | 8.5E-23 | 632 | 853 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.0E-17 | 655 | 782 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PROSITE profile | PS51141 | 9.964 | 940 | 1020 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.57E-8 | 972 | 1009 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-7 | 976 | 1006 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-6 | 979 | 1009 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1178 aa Download sequence Send to blast |
MADSASLLNE DDIEGVEHFG FPSARVDSTG HEVLQEKEDD DGSTLAGSRR KTEKSDDSAA 60 GKPDVSFRTK SEVDVLDDGV LWRKYDQKHV KRSPHPRSYY QCAYAGCTVV KSLQRDSDDP 120 AFVITTYKGE HNHDVVTPSA KILDHHGTTG PQTTGDSFST GSNYSGITGL DNSGVRNLLS 180 DSSRIVSTTS GSAIEEEEHG NNVLFPSLYR EKDITSRTKV KDNDGYHWRK YHQKVIKGNA 240 YPRSYYRCTY VGCSAKKHVE RDLDNPDYVI TSYKGVHNHD FATPRAKCIG HVPLEPLTIG 300 DSSCEKKTKT IGDTLCSGSD NSGLTSLDLR GAENRRSDSL RIGSSKGDSI VEEEGHGNND 360 KFRKCRREKN KVITLRTKSK VDLVDDGYRW RKYGQKAVSG SAYWRGYYKC THTACPARKT 420 VYRDSDDPEF VITKVQNDHS HAAVNALDAV VRPAFSSGAE YETSSFMSLN LGIGKTTAAE 480 TRHEGNVNVM KTDEVKFGVE FSAYDGYSSF DNPFTESGYW NNDEKLSSML WSPFETGFDY 540 IGTALSPFDF GIKTSVADKP MPQPPSSYLL RSGSEESGAI ILDLGVGLSS SAETTCNGKQ 600 EAEKVEGRST LAMAESKWLQ FQESYIYMEE VYLSRSPSPS YLCAHNLISI FLPRCNVEHL 660 WNGGEQIPDL SKAQKLESLM LEGCLNLVSV SSVQHLTNLQ NLNLKRCRSL KGLPSLVKLK 720 LLKTLNLSHC SNLRRLPPSL GCLSSLCELN LRNCVKLDYL PQGVVKLMRS LETLNVSGCS 780 SLWKSIGADD DAALPLPLEN LPSTSSISMS HSFEDVNLDP QPIENVQVEA EGKCASIEDS 840 PPQELPLDLS DIWRKNPLES DDVAAFMTTQ LIDLLPSGSR IREWLLPNMD SSSNACSSPP 900 EDTAFHARNS IQNEGSDDGK SMMEAVREKE DELVGNVKHE DDPESVGKSL QIIGAEFVCH 960 QVEDYDVNPS SEKDGSSLVG KVMQRFCQQC SKYHVLGEFG EKESTCVRNK RPNDCSIDTA 1020 ESDEKRMLVL KRTRMSYDDT VKTDLALHSL ELLEEYLTMS LEDLENANAL SNIESALRAM 1080 IEHYSSSSSN LYDKATVESM LAELKQSVVE TVFSMQKAKS ESAVVAGKMT ELDTDLGHGQ 1140 LHLSLLDAEM SLILEEEENI EAEIQRLMEK KGKLVLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-21 | 67 | 441 | 8 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 3e-21 | 67 | 441 | 8 | 76 | Probable WRKY transcription factor 4 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10016282 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10016282 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 7e-37 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Lus10016282 |