PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016272
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 282aa    MW: 29812.9 Da    PI: 9.4056
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016272genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.5e-10100125227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+ C+++     Ck+Gd+C+FaHg+
  Lus10016272 100 KTRMCKTYNTAEGCKFGDKCHFAHGE 125
                  8***********************96 PP
2zf-CCCH35.32e-11248272126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt++C++f + G C +G+rC+FaHg
  Lus10016272 248 YKTKICDNFVK-GSCTFGERCQFAHG 272
                  9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.6813664IPR000571Zinc finger, CCCH-type
SMARTSM003560.953663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-63763IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-73862IPR000571Zinc finger, CCCH-type
PfamPF146082.84461No hitNo description
Gene3DG3DSA:4.10.1000.101.6E-1495128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-896129IPR000571Zinc finger, CCCH-type
SMARTSM003560.01198125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.35798126IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-6100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.3E-6151225IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-6156224IPR004088K Homology domain, type 1
CDDcd001051.93E-5160219No hitNo description
Gene3DG3DSA:4.10.1000.108.8E-15243278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8246277IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-8247273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.352247274IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-9248272IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDPTRKRGRP GAVVSSSNGG FKKSRQEMDS LAIGVGSKSK PCTKFFSKSG CPFGEGCHFL  60
HHVPGGYNAV AQIMNRPSKP KNVPPSQPPS NGSSTPQAIK TRMCKTYNTA EGCKFGDKCH  120
FAHGEWELGL PTVLSHNKHC MSHTEPPLPA PTAGFGDTAT VKISIAATLA GTIIGNSMQI  180
CRQTGTKLSI GEHEVDPINL RNIELEGTFE QIGQASSMLT ELIANIGGPA TGGGRKSSGE  240
KHHPGSNYKT KICDNFVKGS CTFGERCQFA HGAGEMRKTG V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016272
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744490.0JX174449.1 Linum usitatissimum clone LuBAC346C18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021643121.11e-122zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R08e-90C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB9T5D81e-116B9T5D8_RICCO; Uncharacterized protein
STRINGLus100162720.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-76C3H family protein