PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016110
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 466aa    MW: 52090.3 Da    PI: 8.5533
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016110genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.88.7e-093133452254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  ++yp+  ++  LA+++gLt +qV++WF N R +
  Lus10016110 313 HPYPTDVDKHLLATQTGLTRNQVSNWFINARVR 345
                  89*****************************88 PP
2BELL83.13.6e-27189256572
         BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   ++ ka+L  lleeV+krYk y++q+q+v+ssFe+vaglgs++pY+s A k +Sr+F+++k+ i +q+
  Lus10016110 189 CHEMKARLSYLLEEVCKRYKVYNQQIQMVVSSFETVAGLGSSTPYASSAFKSMSRKFKSMKQVILDQL 256
                  57789***********************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.7E-25127254IPR006563POX domain
PfamPF075261.5E-27132252IPR006563POX domain
SMARTSM003895.4E-5289353IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-26292353IPR009057Homeodomain-like
SuperFamilySSF466893.42E-16295356IPR009057Homeodomain-like
PfamPF059204.9E-17306345IPR008422Homeobox KN domain
CDDcd000866.15E-10307350No hitNo description
PROSITE profilePS5007111.191308349IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MADDDSSLHY YPKRNRNPPP YIQRVTNLSE FVSSSNAFEF GRTSPTSFDG YDLTASKLHH  60
HHQPFNIDQS YQDSINFPAA HGAQEMLTNS RRNEGLSLSL ASNNIPRCGL IRTPTSCSGN  120
GPLGPFMGYA TILKNSRYLR PAQDLMEQWC GTTKVMNSAA FHSSNEVLAN YVADYSGVGC  180
TSSRGVTNCH EMKARLSYLL EEVCKRYKVY NQQIQMVVSS FETVAGLGSS TPYASSAFKS  240
MSRKFKSMKQ VILDQLRQVT KVLGDELVGR QIIGPSNLGF FHEAHQHVYR SQRGLPEGAV  300
AVLRGWLFDH FLHPYPTDVD KHLLATQTGL TRNQVSNWFI NARVRIWKPM VEEIHKLESS  360
HNVVDHPGLS NLTVEHDYNG FGPSSSSIGH EQGQHQGKRS RVEFVQFPMN NGSTIGNSVS  420
LTLGLRHGFV ENVSQHQHQR LQEHEDRLRR EFGGGYGGMV HDFGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-15295353563Homeobox protein Meis2
4xrm_B2e-15295353563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488058.17e-96BEL1-like homeodomain protein 9
RefseqXP_012064774.15e-96BEL1-like homeodomain protein 3
RefseqXP_020532674.15e-96BEL1-like homeodomain protein 3
RefseqXP_024957472.17e-96BEL1-like homeodomain protein 9
TrEMBLA0A067LIF52e-97A0A067LIF5_JATCU; Uncharacterized protein
STRINGLus100161100.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-83BEL1-like homeodomain 8