PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016078
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 1957aa    MW: 217809 Da    PI: 6.7747
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016078genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.61.1e-13853902857
                  -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  +++qle+L e+F+++ yp+ +++e LA+ lgLt  qV+vWF  +R +ek+
  Lus10016078 853 SPQQLEVLREFFANEEYPTNSDMEGLAEVLGLTLGQVRVWFVEKRRREKR 902
                  89**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465659.29E-34665795IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.2E-35677795IPR001623DnaJ domain
SMARTSM003891.6E-11846907IPR001356Homeobox domain
SuperFamilySSF466897.27E-13850905IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-14851905IPR009057Homeodomain-like
CDDcd000866.59E-12851903No hitNo description
PROSITE profilePS5007114.738853903IPR001356Homeobox domain
PfamPF000463.9E-11853902IPR001356Homeobox domain
PfamPF156126.8E-1014531495IPR028942WHIM1 domain
PfamPF156139.0E-1215921665IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1957 aa     Download sequence    Send to blast
MNSSAFDDLL GNLGKKGAES RREAPKLEKD SPAFDDLLPG FGRSSSPSED RWIFLNLRCS  60
ALIILEEDSS YRSASESSPA TRPNASSVKT TPTTIDDPFV VLESTSAHAT KPSSESFPDP  120
LDEIGRFNSS GSTNVDNSHV HRGSFDDLDP LDNLSKSVPL ASSKVNERGK ERSPLRSGAD  180
KGGTFSPASR DPVDRYPVEN SGRDSQHNQP FDGFQETPFG MAPGPRVASK PATAPPSYTN  240
VSANDAFSSP VSEEVSESAD EIWLTVSEIP LFTKPTSAPP PSRPPPPRPP RLSARKRFNE  300
QSFSNSRSPS SAQAPRSSAS QFDELDDFAT GRTQSNVNDR ADSSAGEEED TDSSAAASAA  360
AMKDAMDKAE AKIRHMRERD YIKASRSKES TQVDRDVLEA EQRELRERQE RLDRDRQQSQ  420
REAEEREQIR LRELEREREE KEREQKRQER ERERVERDRA RQAVERANRE ARERAAADAR  480
VRAERAAAGK ASAEARERAE RAAVQRAQAE ARERAAAEAK ERAERAAAEA RERANAGARE  540
KEMDARARAD RAAVERAAAE ARERAAAAAR ANQQKYEAQP KNENDLESFF SSRPSSAPRP  600
RATSSDPFFD TANKGAPEVP KSTSVGSTSN MRKASSATNI VDDLSSIFGA AGTGKSGDFQ  660
DIAGETEERR RARLERHQRT QERAAKALAE KNQRDLNAQM EQEERHRIAE TLDFEIKRWS  720
AGKEGNLRAL LSTLQYVLWP ECGWQPVSLT DLITAASVKK VYRKATLCIH PDKVQQKGAN  780
LQQKYIAEKV FDMLKCSAPT MLWYCVCFHF SSNSSGPGEN TRLCGKLIWV SWKVLIIARR  840
DCAVGAMGLK RKSPQQLEVL REFFANEEYP TNSDMEGLAE VLGLTLGQVR VWFVEKRRRE  900
KRKIQASTPL QSKKQCLVGE GNQTAIASSA GKVLTQQRAL SRDMSKSSSS LSSEVENGIS  960
ERSLARVQKL LPSEYIPSKI FRKDGPSLGV EFDSVPSGGF HAVEDSRKSI SGSEDDETAE  1020
EKRKVLHINP QSGVYQPNVY STCLRQSYVI YTAGFFVSQH VRDCTLSAMV KKHGMGKGVM  1080
TKVLENIRIL LRVQDYSVSA CMEKHGMGKG LMTARQAINP NCGDVSSDIH FSDGRNTSTL  1140
EIPTPDSSKL RCQKRKRQSV MAQSKGEETE KQLFREKCEL ALDGRIAQKS LAEVELLMDD  1200
EEVEMRELHA GPNPLSCSEH CSDNGLHSCP LCKVTMKICS FTLDAFAQAF HDKVEGQELL  1260
VNIWKSSLNP LTWTEILRQV LVAAGLGSKQ GASRRQALSK EMRIMLKYGL TPGTLKGKLF  1320
RLMFQKGNHG IKVSELAKST EVVELNLANT TEERELLISS TLSSDITLFE KISLSAYRLR  1380
VSSLLKEDGT FQSESEDSGS IHDDFNDAGM CSSSDSECET ESSSQRKLMP LKCNTSKSNM  1440
FKIHNEIDES NPGEAWLLGL MDGEYSDLSI EEKLNLLVAL VDLVSAGSSI RMEVMLIALG  1500
AFYQDPVRPA FGTVPNLQRY GSGGKIKRSS LHRPSWVHGK QIFDPNITSS LSKSQPVDSS  1560
VSICKLNPED KSSGTGTDAK ETEAGACLHH MQSVFLGSDR RYNRYWLFLG PCDFHDPGHK  1620
RVYFESSEDG NWKVVDTAEA FRSLLSVLDN RGRREAHLIE SLEKRETFLC HEMSTVLVND  1680
AASCHSSQPI LSELSVREDS SSPISDVDNN LSLTETTNDS LPRCSAIVLD AERNLEEQNP  1740
RRSRLQQFDA WIWSHFYCGL NAVKHNKRSY FESLSRCQTC HDLYWRDEKH CRICHSTFEV  1800
DFDLEEKYAV HTATCRLKAE NGKLPQYKVL PSVLQTLKAG VHAIESAMPE GALVGAWTKS  1860
AHRLWVKRLR RTSSLAELLR VVTDFVAAIN EDWLCQYNDA PGFNPFAEAI VACFSSMPQT  1920
SSALALWLVK LDGLILQHLE NSQCEENHES AEVIRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ag7_A2e-28710795994Putative uncharacterized protein F9E10.5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1896902RRREKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016078
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8853885e-46HQ885388.1 Linum usitatissimum clone Contig1267 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015578100.10.0homeobox-DDT domain protein RLT3 isoform X2
TrEMBLA0A1Q3BK610.0A0A1Q3BK61_CEPFO; Homeobox domain-containing protein/DDT domain-containing protein
STRINGLus100160780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61181519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator