PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016018
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Nin-like
Protein Properties Length: 874aa    MW: 95946.7 Da    PI: 5.7393
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016018genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK901.9e-28553604152
       RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  aek+i+l++l+++F++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rk+k++
  Lus10016018 553 AEKKITLDVLRQHFAGSLKDAAKSLGVCPTTLKRICRQHGISRWPSRKLKKV 604
                  589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.314541624IPR003035RWP-RK domain
PfamPF020423.2E-26556604IPR003035RWP-RK domain
SuperFamilySSF542773.19E-23779867No hitNo description
SMARTSM006661.8E-29785868IPR000270PB1 domain
PROSITE profilePS5174527.821785868IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.3E-22786865No hitNo description
CDDcd064071.67E-41787866No hitNo description
PfamPF005641.8E-21787867IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MDGSSWQSGM LLGSLADTSM DFDYMDELLL DGCWLETTDG SDFFNPAAPS DQFAATFHPS  60
TVLSPAVDIN NVDVSAGTSQ RNTEEEGKQM SVFDKAGVSG RENDDGTAEG SGFSQRWWIG  120
RKPNPIPGST VKDRLVGAIG SIRDLIKDKD ALIQIWVPTD SRMGRRVLTT FDQPFAVDGS  180
SQRLANYRDI SINYQFPAEE GGDSKDFAGM PGRVFLGKVP EWTPDVRFFR NDEYPRVDHA  240
RQYNVCGTLA VPVFEQHSKV CLGVIEIVTT RQEVKYQSEL EKISKALEAV DLRSSETPST  300
QSMKSRDIAY QAALPEIQQV LKSACETHNL PLAQTWVPCI QQGKGGSRHS DENYFHCVST  360
VDQACFVSDT QIKGFHEACS EHHLLKGQGV AGRAFTTNEP CFSSDVTLYS KTEYPLSHHA  420
RMFGLCAAVA IRLRSVHTGA ADFVLEFFLP AGCRTPEEQE KMLNSLSVII QHVCQTLRVV  480
TDKELEEEAD SVVFPHVDLT DVITVPSAEK GMELLETSPD DKKGGIENDG EFGVGGFSCT  540
IEGKQVDRKR TKAEKKITLD VLRQHFAGSL KDAAKSLGVC PTTLKRICRQ HGISRWPSRK  600
LKKVGHSLQK LQVVMDSVQG ASGALHIRSF YTNFPELGSP QGSKSCSPLP VSKLDQNPEP  660
SATPPDATAK STSSSSCSQG SSSSHSLSSG SQQQQQSATE FAVLGEESEQ KPLLDQSATN  720
GLVKRVRSEA RLRISGEVEA AAAKVTLARA QSHQSLAEEQ ANLGNRIHQL AKSGTRVPKW  780
NGTDAQRVKV AYGNEIVRFR MSKNWGFTDL LLEIARRFGI EDMGRFDVKY LDDDSEWVLL  840
TCDEDVEECV EVCRGSQSQT IKLLLQVSSR CLS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021675145.10.0protein NLP4-like
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A2K2BBL20.0A0A2K2BBL2_POPTR; Uncharacterized protein
STRINGLus100160180.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein