PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10015900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 193aa MW: 20838.8 Da PI: 5.2191 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 38.9 | 2.1e-12 | 61 | 82 | 4 | 25 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGC 25 vrY+eC+kNhA+ +GghavDGC Lus10015900 61 VRYRECQKNHAVGIGGHAVDGC 82 89******************** PP | |||||||
2 | Homeobox | 15.4 | 3.3e-05 | 130 | 185 | 1 | 52 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r+Rt+ft eq e + +l e + ++ ++++ e+ +++g++ ++ kvW +N + Lus10015900 130 KRHRTKFTGEQKEMMRRLSErlgwRIQKHDEAAVEQFCSETGIKRKVLKVWMHNNK 185 79*****************9777779999*************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-9 | 61 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-5 | 62 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 13.079 | 63 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.74E-20 | 115 | 190 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-31 | 116 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.7E-25 | 129 | 186 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEFDDRQDLE EEEEEEEGDE EEEEEMRPTA PASAPTKNPS SGGWGEAAGS STAAKKSSAP 60 VRYRECQKNH AVGIGGHAVD GCWPLPLPAT AAAGSGGGGG GGNYSREEED VSNPSSSGGG 120 GGMNTSYKKK RHRTKFTGEQ KEMMRRLSER LGWRIQKHDE AAVEQFCSET GIKRKVLKVW 180 MHNNKNTIGK EP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-27 | 130 | 187 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10015900 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018732217.1 | 1e-47 | PREDICTED: zinc-finger homeodomain protein 2 isoform X3 | ||||
Swissprot | Q9SB61 | 8e-43 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A2P5PYG7 | 2e-45 | A0A2P5PYG7_GOSBA; Uncharacterized protein | ||||
STRING | Lus10015900 | 1e-139 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-32 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Lus10015900 |
Publications ? help Back to Top | |||
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