PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10015888 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 226aa MW: 25700.5 Da PI: 6.7787 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 4 | 24 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 +kC C k F++ ++++H+ Lus10015888 4 HKCRLCFKFFPNGTDMRSHMI 24 79*****************95 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00057 | 135 | 157 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C k+F++ L H +H Lus10015888 135 YKCRSCEKVFKSYQALGGHRASH 157 9************9999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 43 | 4 | 24 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 133 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.97E-7 | 133 | 199 | No hit | No description |
PROSITE profile | PS50157 | 11.344 | 135 | 162 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 135 | 157 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.5E-10 | 135 | 159 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 137 | 157 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.2 | 177 | 199 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.2E-8 | 178 | 199 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 179 | 199 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEKHKCRLCF KFFPNGTDMR SHMINLSPSS SSSEETHSSS SSGVEKFANL FFFGQNSNES 60 SEWSKDPRKQ VDERQVSSIS DARTNEEDLT FGLMMLSPDR WKSSLEIEID DEEEEEEEEC 120 EKRGKSGYNY NNRKYKCRSC EKVFKSYQAL GGHRASHNKE KLLHHVNIDR RPPPRPQECP 180 YCDRIFSSGQ ALGGHKGSHF IGESANSIRC SKYLGTIDLN LPALS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10015888 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483087.1 | 1e-35 | PREDICTED: zinc finger protein ZAT9-like | ||||
Swissprot | Q9M202 | 3e-34 | ZAT9_ARATH; Zinc finger protein ZAT9 | ||||
TrEMBL | A0A2P5QYI7 | 4e-40 | A0A2P5QYI7_GOSBA; Uncharacterized protein | ||||
STRING | Lus10015888 | 1e-167 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-33 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10015888 |