PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10015765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 257aa MW: 29434.1 Da PI: 7.6847 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.7 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Lus10015765 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 95 | 1.2e-31 | 87 | 177 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ea + s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL++Le+qL+ slk+iRs++++++l+q+++lq+ke+ l+e+n++L+++l+e Lus10015765 87 REALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLSTKELESLERQLDMSLKQIRSTRTQYMLDQLNDLQRKENLLNEANNNLKQRLME 177 45556689*******************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.54E-44 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 3.79E-33 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 15.25 | 91 | 181 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.2E-26 | 94 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSSMLKTLER YQKSNYGAPE SNHISAREAL EISSQQEYLK LKARYEALQR SQRNLLGEDL 120 GPLSTKELES LERQLDMSLK QIRSTRTQYM LDQLNDLQRK ENLLNEANNN LKQRLMEGYQ 180 INNTLQLNSG AEEVDYGRHQ AQQQPQGHHH GFFHPLDCEP SLHIGYHHEE QDPTMTDLTV 240 ATAGPSANNY MPGWLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 8e-45 | 76 | 178 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 8e-45 | 76 | 178 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 8e-45 | 76 | 178 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 8e-45 | 76 | 178 | 1 | 104 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10015765 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631286.1 | 1e-145 | agamous-like MADS-box protein AGL9 homolog | ||||
Swissprot | Q8LLR0 | 1e-144 | MADS4_VITVI; Agamous-like MADS-box protein MADS4 | ||||
TrEMBL | A0A2C9UNU1 | 1e-145 | A0A2C9UNU1_MANES; Uncharacterized protein | ||||
STRING | Lus10015765 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF229 | 32 | 178 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 1e-113 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10015765 |
Publications ? help Back to Top | |||
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