PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10015760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TCP | ||||||||
Protein Properties | Length: 248aa MW: 26604.5 Da PI: 10.1736 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.3 | 9.6e-37 | 50 | 151 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 +k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLl+q++p+i+++tgt++++as+ a+ss+s+++ ++s+ Lus10015760 50 PKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLNQSEPSIIAATGTGTIPASALaAAGSSVSNSEMQGSSvsfsagnnwaa 147 6999****************************************************************888655555555554444344544444444 PP TCP 89 ...k 89 + Lus10015760 148 lmnA 151 4440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.4E-32 | 54 | 236 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.706 | 55 | 109 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEQQQQQPKV PNHLDDPHQN SNNPLSAMKD VQITSLVPNS STKKQQSLGP KRSSNKDRHK 60 KVDGRGRRIR MPALCAARIF QLTRELGHKS DGETIQWLLN QSEPSIIAAT GTGTIPASAL 120 AAAGSSVSNS EMQGSSVSFS AGNNWAALMN ANLQIARSNL TAGIWQPTNN TTIHGGGMEF 180 PNINAGLMSF YSSMFSGGSG NISPGLELGL SQDGGLNNLN SQFYQQMAHN QQQQQKEQSS 240 DSRGSRQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10015760 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021632103.1 | 2e-72 | transcription factor TCP20-like | ||||
Refseq | XP_021632104.1 | 2e-72 | transcription factor TCP20-like | ||||
Refseq | XP_021636341.1 | 2e-72 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 1e-54 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A251JE22 | 4e-71 | A0A251JE22_MANES; Uncharacterized protein | ||||
STRING | Lus10015760 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-48 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10015760 |