PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10015743 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 200aa MW: 22323.1 Da PI: 6.0168 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.5 | 1.6e-20 | 31 | 173 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklelee......vikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gk......rknratk....sgy 82 p G+rF+Ptd+elv++yL +k g + + ++ +++ d + + P dL + + a+++ewy F++++++ ++ g+ + + +g+ Lus10015743 31 PLGYRFKPTDHELVKHYLVPKSMGLESDSATlgcignTMNASDFFALPPYDLVSPI-AKKEEWYVFIHQANEDTKqGDnddnklTVT---RtvdgEGF 124 89********************99995554455555469999**********7444.5679***99998887774233222222333...233459** PP NAM 83 Wkatgk.dkevlsk.kgelvglkktLvfykgrapkge.ktdWvmheyrl 128 W++ + d +++++ +g g k +++y ++ +g +t+W ++eyrl Lus10015743 125 WESNKSfDLTICDHsSGLPLGFKSRFTYYLSSSTRGIlETEWKLDEYRL 173 **87775778887656667**********8877777659********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.02E-23 | 28 | 195 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.628 | 30 | 196 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-15 | 31 | 173 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MMNSSVVSNG GGGRRRLLVS SEETEVAKTF PLGYRFKPTD HELVKHYLVP KSMGLESDSA 60 TLGCIGNTMN ASDFFALPPY DLVSPIAKKE EWYVFIHQAN EDTKQGDNDD NKLTVTRTVD 120 GEGFWESNKS FDLTICDHSS GLPLGFKSRF TYYLSSSTRG ILETEWKLDE YRLFSPPNSK 180 VLSTHGSLIN CTITYRINV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10015743 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10015743 | 1e-147 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14439 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 3e-12 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10015743 |