PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015664
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 616aa    MW: 67358 Da    PI: 5.3616
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015664genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07498546348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +W   E  +lvd+v ++G g W+ I r        Rt  ++k++w+++l
      Lus10015664 498 AWALAEVIKLVDGVSMYGAGKWSEIKRLSFassPFRTSVDLKDKWRNLL 546
                      57888999*******************9999999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.84491550IPR017930Myb domain
SuperFamilySSF466896.86E-14493557IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-11493552IPR009057Homeodomain-like
SMARTSM007174.1E-6495548IPR001005SANT/Myb domain
CDDcd116602.07E-17497547No hitNo description
PfamPF139215.4E-5499553No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MVSPLMFLPP PSAVSPLFVV VLGDWVSNQV GVEGNGEGKL LEESEVEKLC SSLASSPHHI  60
VDPIVYKLVR VEGDGRFVPA TDDEVMEVAD LFLDDNIDTD FLDIEQTVGC ISGGGMHQLG  120
STGGLLQAGN QDFHPDEISV QPQETVSDFA QSICESFISG CEGARDFPDP LEKFSEDVGL  180
NPVVDPSMPD FSKVKGEICL DGLSIKELQE TFRATFGRET SVKDKQWLKR RIAMGLTNSC  240
DVSASSFTIR DNKLVANGVS SDNMVAVIGS GQLPEANSCN ERQLPSIQSS EQKNEQVVSD  300
ERLREGGMCE DHKDVDDHTE ERAAKRVRKP TKRYIEELSE TESKEAISRL MDVNPNSGPG  360
QPSPNCHMRL ERNVSLGGRT LIIRLDSLGG YEIQIPCASR VRRSRPRKDF MTLLKFNSID  420
VTTTVVQKAF AAHIAQPQNE NMNMVTKPQS IPERPQSLLV DVAGKEEPKN EDSSGDSDGN  480
ITTVPTPKGG FRRKHHRAWA LAEVIKLVDG VSMYGAGKWS EIKRLSFASS PFRTSVDLKD  540
KWRNLLKASF AQAPPDKGIN MRKNAAASPI PETILSRVRK LVEMQSLVRP GGSNKAAGNS  600
PHCTDNGPKK QSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401407RRSRPRK
2401408RRSRPRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015664
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068895.10.0uncharacterized protein LOC105631404 isoform X3
TrEMBLA0A067KX710.0A0A067KX71_JATCU; Uncharacterized protein
STRINGLus100156640.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-107TRF-like 6