PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015657
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 376aa    MW: 42844.5 Da    PI: 7.5836
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015657genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.91.9e-067596223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C+ Cg +F+ + +L+ H+r+H
  Lus10015657 75 TCEECGACFRKPAYLREHMRSH 96
                 6********************9 PP
2zf-C2H216.62.2e-05102126123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  +kC+   C+ s++rk++L+rH+  H
  Lus10015657 102 FKCTveGCPASYRRKDHLNRHLLQH 126
                  89*******************9887 PP
3zf-C2H221.94.7e-07168192123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y C+   Cgk F+ +s Lk+H+ +H
  Lus10015657 168 YMCEepGCGKAFPYPSKLKKHQDSH 192
                  899999****************998 PP
4zf-C2H212.70.00038216236423
                  TTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   4 pdCgksFsrksnLkrHirt.H 23 
                  p Cgk Fs+   Lk Hi+  H
  Lus10015657 216 PGCGKNFSNEQCLKAHIQAsH 236
                  39***************9877 PP
5zf-C2H216.22.9e-05272295323
                  ET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                  C    Cg +Fs+k nL++H +  H
  Lus10015657 272 CDhdGCGLTFSSKTNLNKHVKAvH 295
                  77789**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355293355IPR015880Zinc finger, C2H2-like
SMARTSM003550.00487496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.79674101IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-87496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SuperFamilySSF576675.9E-1183134No hitNo description
Gene3DG3DSA:3.30.160.607.8E-1397127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.2E-4102126IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621102126IPR007087Zinc finger, C2H2
PROSITE patternPS000280104126IPR007087Zinc finger, C2H2
SMARTSM003550.41131156IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203131161IPR007087Zinc finger, C2H2
PROSITE patternPS000280133156IPR007087Zinc finger, C2H2
SuperFamilySSF576673.13E-6164192No hitNo description
Gene3DG3DSA:3.30.160.606.6E-9164194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0011168192IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.344168192IPR007087Zinc finger, C2H2
PROSITE patternPS000280170192IPR007087Zinc finger, C2H2
SMARTSM003550.15211236IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-4212232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280213236IPR007087Zinc finger, C2H2
SMARTSM0035523239260IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.83E-9254304No hitNo description
Gene3DG3DSA:3.30.160.602.2E-7267295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.5E-4270295IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.133270300IPR007087Zinc finger, C2H2
PROSITE patternPS000280272295IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-4296323IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035543301327IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280303327IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEAELPEEAM EKEMEEAQDS SYTTTTTSDI RRYLCKYCGI SRSKKYLISS HILSHHKDEM  60
SDEEEEAEEG TKSNTCEECG ACFRKPAYLR EHMRSHSLER PFKCTVEGCP ASYRRKDHLN  120
RHLLQHKEKL FKCPVESCTR EFVLESDVEG HVRDKHCKSS EADGSKQYMC EEPGCGKAFP  180
YPSKLKKHQD SHGKSLSITE LLYITLDSIE AICLEPGCGK NFSNEQCLKA HIQASHQHIN  240
CEVCGSKQLK KNIKRHLRSH EAGSESTKRV SCDHDGCGLT FSSKTNLNKH VKAVHLEAKP  300
FACGFPRCGM RFSYKHVRDN HEKSGCHVYT CGDFEESDEH FRSRPRGGMK RMCPSVETLL  360
TRKRVTLPPE LENCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-146823116180Aart
2i13_B2e-146823116180Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015657
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376244.11e-163transcription factor IIIA
SwissprotQ84MZ41e-134TF3A_ARATH; Transcription factor IIIA
TrEMBLU5FVV91e-162U5FVV9_POPTR; Uncharacterized protein
STRINGLus100156570.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-132transcription factor IIIA