PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015546
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 354aa    MW: 38238.3 Da    PI: 9.592
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015546genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.4e-31134192259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed++++++tYeg+Hnh+
  Lus10015546 134 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtACPVRKQVQRCAEDKTILITTYEGNHNHP 192
                  7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33118194IPR003657WRKY domain
SuperFamilySSF1182901.12E-27126194IPR003657WRKY domain
PROSITE profilePS5081129.034128194IPR003657WRKY domain
SMARTSM007745.5E-36133193IPR003657WRKY domain
PfamPF031061.5E-26135192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MKKNEVIWVV TVIVIIHFLV SQVARQFSER GPPSSTATES SSDERTRSES SPRNEKGTIT  60
TNGNKTAIVD QEYCSRLDSN QHNSQLGRIN PNTSNSDAAG SETPKNMEQQ STTTTTIRKA  120
RVSVRARSEA PMISDGCQWR KYGQKMAKGN PCPRAYYRCT MATACPVRKQ VQRCAEDKTI  180
LITTYEGNHN HPLPPAAMAM ASTTTAAATM LLSGSTSTTD HAATITSTTT HDLLTANLLS  240
RAILPPPNTG LNNNHVATIS ASAPFPTVTL DLTARGQPVY YNQSKFSGLQ LSHQQYPADR  300
SVMPIMMLPP PPPQASLTES VSAATAAVEC APPLLFFRIL TSPPRLLRLS PPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21120196176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015546
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921697.12e-86probable WRKY transcription factor 31
SwissprotQ9XEC37e-83WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A385NHT04e-85A0A385NHT0_CAMSI; WRKY transcription factor 31
STRINGLus100155460.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-60WRKY family protein