PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10015400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HB-other | ||||||||
Protein Properties | Length: 234aa MW: 25568.2 Da PI: 6.0408 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.8e-19 | 44 | 99 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+++ + yps+++r++L++klgL++rq ++WF+ rR k++k Lus10015400 44 PKRQMKTPFQLETLEKAYSLETYPSEATRTKLSQKLGLSDRQLQMWFCHRRLKDRK 99 69****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.27E-18 | 31 | 101 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 33 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.617 | 40 | 100 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.2E-18 | 42 | 104 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.6E-17 | 44 | 99 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.02E-16 | 45 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDANSEADDH HRDPDPDDDS MAGNKNNVAV SSYSSAAAAA NGKPKRQMKT PFQLETLEKA 60 YSLETYPSEA TRTKLSQKLG LSDRQLQMWF CHRRLKDRKE DKRDGNGMKK PHGKASLMKS 120 SSSPVDDYHQ LKAGSDDDHH QVGSDDESER GSGSSRYVEP SRNNAACFDD GHVPRRYHQS 180 SSTMLSAMKA RAIACVEAQL EEPLKEDGPV LGIEFDPLPP DAFGAAIGTA FLA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 99 | RRLKDRKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10015400 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018811588.1 | 7e-58 | PREDICTED: homeobox-DDT domain protein RLT1 isoform X1 | ||||
Refseq | XP_018811589.1 | 6e-58 | PREDICTED: homeobox-DDT domain protein RLT1 isoform X2 | ||||
Refseq | XP_018811590.1 | 7e-58 | PREDICTED: homeobox-DDT domain protein RLT1 isoform X3 | ||||
Swissprot | F4HY56 | 5e-46 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A2I4DWR3 | 1e-56 | A0A2I4DWR3_JUGRE; homeobox-DDT domain protein RLT1 isoform X2 | ||||
TrEMBL | A0A2I4DWR4 | 2e-56 | A0A2I4DWR4_JUGRE; homeobox-DDT domain protein RLT1 isoform X1 | ||||
TrEMBL | A0A2I4DWS7 | 2e-56 | A0A2I4DWS7_JUGRE; homeobox-DDT domain protein RLT1 isoform X3 | ||||
STRING | Lus10015400 | 1e-173 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15781 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 2e-39 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10015400 |