PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10015392

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 281aa MW: 31121.5 Da PI: 7.9298

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10015392	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.1	2.5e-34	24	166	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.......s 80 lp+G++F+Ptd+e++ +L++kv +++ + + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + Lus10015392 24 LPAGMKFDPTDQEIL-GHLEAKVLSDPrqvhpmI---DefipTIEGEnGICYTHPEKLP-GVSNDGQVRHFFHRPSKAYTTGTRKRRKVHtdeqdgsE 116 799*********9.89**9996664332...133333555547******.666777888**************74334555547 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk++++l+ +++++g kk+Lv+y gr++k+ekt+Wvmh+y+l Lus10015392 117 TRWHKTGKTRPILVDRETVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 166 88********99*********66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.11E-37	20	185	IPR003441	NAC domain
PROSITE profile	PS51005	32.992	24	185	IPR003441	NAC domain
Pfam	PF02365	2.4E-15	25	166	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDSSSSFQDQ GGGGGGGIQD LPGLPAGMKF DPTDQEILGH LEAKVLSDPR QVHPMIDEFI 60 PTIEGENGIC YTHPEKLPGV SNDGQVRHFF HRPSKAYTTG TRKRRKVHTD EQDGSETRWH 120 KTGKTRPILV DRETVKGFKK ILVLYTNYGR QRKPEKTNWV MHQYHLGNNE EEKDGELVVS 180 KVFYQTQPRQ CGGGGSSSVS IKELSTSGGN NNVTPNLVDY YGSTFVSFEH SEGSHVNRES 240 PPHHQHHHHH HGLMMIPSLV GSSYTRLADG ASKGSSKETR *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10015392

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021660928.1	1e-129	NAC domain-containing protein 73-like
Refseq	XP_021660929.1	1e-129	NAC domain-containing protein 73-like
Refseq	XP_021660930.1	1e-129	NAC domain-containing protein 73-like
Refseq	XP_021660931.1	1e-129	NAC domain-containing protein 73-like
Refseq	XP_021660932.1	1e-129	NAC domain-containing protein 73-like
Refseq	XP_021660933.1	1e-129	NAC domain-containing protein 73-like
Swissprot	O49459	1e-104	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	B9RB87	1e-126	B9RB87_RICCO; NAC domain-containing protein 21/22, putative
STRING	Lus10015392	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-107	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Lus10015392

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]