PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015377
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 539aa    MW: 58758.3 Da    PI: 8.2102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015377genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.5e-32242298259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYG K++kgse+prsYY+Ct+++Cpvkkkvers  d++++ei+Y+g+Hnh+
  Lus10015377 242 DDGYNWRKYGHKPIKGSEYPRSYYKCTHPNCPVKKKVERSG-DGQITEIIYKGQHNHD 298
                  8***************************************9.***************7 PP
2WRKY1079.7e-34421479159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg++WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+a dpk+v++tYeg+Hnh+
  Lus10015377 421 LDDGFRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERAAADPKAVITTYEGKHNHD 479
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.696236300IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-30238300IPR003657WRKY domain
SuperFamilySSF1182904.71E-26240300IPR003657WRKY domain
SMARTSM007741.1E-37241299IPR003657WRKY domain
PfamPF031062.1E-25242298IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-36407481IPR003657WRKY domain
SuperFamilySSF1182902.62E-29413481IPR003657WRKY domain
PROSITE profilePS5081138.297416481IPR003657WRKY domain
SMARTSM007742.7E-40421480IPR003657WRKY domain
PfamPF031062.0E-26422479IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MADKRDSSSS AALPRPTITL PPRPSMDTFF SGGLSPGPMT LVSSFFSDSY PGDSDSRSFS  60
QLLAGAMASP LARPSFFPEF SPRVPAASSS SAALSSTEDA APGTTAGFGF KQSRPMNLVV  120
PRSPLFTVPP GLSPSGLLNS PGFFPPQSPF GMSHQQALAQ VTAQAAIAAQ SQMYMQAQFH  180
PSSVAGPAEV LPVQPSYTAA EDSNWQMPPT TSNLQNTVLE PSEFSHSEKY QPLPPAVDKP  240
SDDGYNWRKY GHKPIKGSEY PRSYYKCTHP NCPVKKKVER SGDGQITEII YKGQHNHDLP  300
QSNKRARDNS DQNVSISSQF KTEPVPQGQP CDANMLHEIA PAYSESGRDQ ESRQMDPTEL  360
PAPSSYRRAE DQIANEQEAA DNAPNLKRRK TDAGASEVAS SHKTVTDAKI IVQTRSEVDL  420
LDDGFRWRKY GQKVVKGNPH PRSYYKCTSA GCNVRKHVER AAADPKAVIT TYEGKHNHDV  480
PAGRNSSHNK GGNNYSKIQS MVAHKPQQQL QSLEGMNYGN NEEQRPVLLR LKEEEVVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-40242482878Probable WRKY transcription factor 4
2lex_A6e-40242482878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015377
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4700086e-55KC470008.1 Jatropha curcas WRKY transcription factor 06 (WRKY06) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035813.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-140WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2K1X5D20.0A0A2K1X5D2_POPTR; Uncharacterized protein
STRINGLus100153770.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-111WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]