PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10015367

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 345aa MW: 38937.1 Da PI: 8.3562

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10015367	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.4	1.2e-52	11	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 + pGfrFhPtdeelv +yL++k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++ Lus10015367 11 MLPGFRFHPTDEELVGFYLRRKIQHRTLSI-ELIKQVDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGS 107 579*************************.89***********8888999***********************************9566 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lvfy+gra kg ktdW+mhe+rl Lus10015367 108 KCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 138 77*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-57	9	176	IPR003441	NAC domain
PROSITE profile	PS51005	56.038	11	176	IPR003441	NAC domain
Pfam	PF02365	2.2E-25	13	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MEEKGEVEEE MLPGFRFHPT DEELVGFYLR RKIQHRTLSI ELIKQVDIYK YDPWDLPKLA 60 TTGEKEWYFY CPRDRKYRNS ARPNRVTGAG FWKATGTDRP IYSSEGSKCI GLKKSLVFYR 120 GRAAKGIKTD WMMHEFRLPP LPDRSPSPPH PPPKKLLLDK TLPPNETWAI CRIFKKTNSM 180 AQRALSHPWM SSPMLPPADN SSHIFNHNPS QLGSSLVFQQ QPMFPFPACA TNNNFIFPPI 240 GSSIPPKTTL ISDPTTSESL EFSGFSIRNL QHSLESSADQ GDDLRKNNNI NQWDGIGNGN 300 GMRSSSIGFP FSLPTDDDVW DTVVHPAGDM SSNAACYSTN KCYT*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MEEKGEVEEE MLPGFRFHPT DEELVGFYLR RKIQHRTLSI ELIKQVDIYK YDPWDLPKLA  60
TTGEKEWYFY CPRDRKYRNS ARPNRVTGAG FWKATGTDRP IYSSEGSKCI GLKKSLVFYR  120
GRAAKGIKTD WMMHEFRLPP LPDRSPSPPH PPPKKLLLDK TLPPNETWAI CRIFKKTNSM  180
AQRALSHPWM SSPMLPPADN SSHIFNHNPS QLGSSLVFQQ QPMFPFPACA TNNNFIFPPI  240
GSSIPPKTTL ISDPTTSESL EFSGFSIRNL QHSLESSADQ GDDLRKNNNI NQWDGIGNGN  300
GMRSSSIGFP FSLPTDDDVW DTVVHPAGDM SSNAACYSTN KCYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-52	13	179	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-52	13	179	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-52	13	179	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-52	13	179	19	168	NO APICAL MERISTEM PROTEIN
4dul_A	3e-52	13	179	19	168	NAC domain-containing protein 19
4dul_B	3e-52	13	179	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10015367

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021818943.1	1e-127	protein FEZ-like
Swissprot	Q9ZVH0	8e-98	FEZ_ARATH; Protein FEZ
TrEMBL	A0A251Q9C6	1e-123	A0A251Q9C6_PRUPE; Uncharacterized protein
TrEMBL	A0A2P6S4M6	1e-123	A0A2P6S4M6_ROSCH; Putative transcription factor NAM family
STRING	Lus10015367	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-94	NAC family protein

Link Out ? help Back to Top
Phytozome	Lus10015367

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]