PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015325
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 1792aa    MW: 201893 Da    PI: 4.8568
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015325genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-183489257
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                  kR+  t+ qle+Le+++  + yp++++r eLAkklgL +rq ++WF+ rR k+++
  Lus10015325 34 PKRQMKTPFQLETLEKAYSVETYPTEATRIELAKKLGLADRQLQMWFCHRRLKDRR 89
                 69****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-181590IPR009057Homeodomain-like
SuperFamilySSF466894.71E-172292IPR009057Homeodomain-like
PROSITE profilePS5007116.863090IPR001356Homeobox domain
SMARTSM003894.1E-183294IPR001356Homeobox domain
PfamPF000461.2E-153489IPR001356Homeobox domain
CDDcd000865.08E-133589No hitNo description
SMARTSM005711.8E-23560619IPR018501DDT domain
PROSITE profilePS5082716.697560619IPR018501DDT domain
PfamPF027916.6E-18562616IPR018501DDT domain
PfamPF050661.4E-13739807IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156128.1E-4964989IPR028942WHIM1 domain
PfamPF156131.6E-1311191191IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1792 aa     Download sequence    Send to blast
MDSNSDGEDY QSRKPNKGVA SGSGGGGGGG DGKPKRQMKT PFQLETLEKA YSVETYPTEA  60
TRIELAKKLG LADRQLQMWF CHRRLKDRRE EKKEEKKVEK KEEKTPAKKP RKALPMPESP  120
VEDVKAEVPD HGSNYGSGSG SGSSPCTDPR RMPVADVPMS RGYKEPPRQS AILVRAIACV  180
EAQLGEPLRE DGPILGIEFD TLPPDAFGAP IAAVVEEQKR YSYEEKIVQR REGKSKKASG  240
RVVHEYQFLQ DQSSIRPDTY RQVTQHSYHD TPADTSMRRT STSVRGDERL PRVHGIQTPA  300
SRVRLLSAHE GKSHLLPSPQ RDDDYLPQAH PFQNHRISGE STSHHMLAPE NTSVFQDANV  360
FHGESDFMTE KKPKIKNEEA RLREAEAQES RTRKEIEKQD LLRRRNEERM RKEMERQDRE  420
RKKEEERLIR ERQRDEEKSL REQKRELERR EKMLQKEYLR AEKQKQRDEQ RKEREEVRRK  480
AAIEKATARR IAKESLDLIE DEQLELMELA AANKGLSSIV QLDYNTMQTL DAFRDSLCTF  540
PSESIQLKKP FSFQPWVDSE DNVGNLLMIW RFCITFADVL GLWPFTLDEF IQALHDYDSR  600
LLGEIHISLL KLIIKDIEDG GRAPTGLGTN QYSVANPEGG HPQIVEGAYM WGFDIRKWQQ  660
LLNPLSWPEI LRELALSAGF GPQLRDKNAA WRHSNDEANR YQETVLNLRN GLAAENAFAL  720
MREKGLLNPR KSRHRLTPGT VKFAAFHVLS LEGSEGLTLI ELADKIQKSG LRDFSTSRTP  780
EASISVALTR DQKLFERVAP STYCLRDPYR KDPADGEAIL AEARKKMYVF ANGFLEEEDA  840
DEVADDVERD DDSEAEADDD PEVDDLSTPL HADKIVGQAN GVHTPFGNDN DDEKENGPTE  900
IENDDPHIWS SLIVKSESEN DLSRFPENGA RETSTPGTID QFADRNPLVG NAKEENVEID  960
ESKFGESWVQ GLAEGEYSHL SVEERLDALF KLVGIANEGS IIRSVLEDRL EAATALKKQM  1020
WAEAQSDRSH LRDDVIQILE VPSGNPSPSH QADDFKDASR NIIEEQKLLL TSENVQNGNF  1080
HDDRTAAVQD LQLGYSSKRF RSQLKAYTAH VAEETYIYRS LPLGQDRRRN RYWLFVASAS  1140
HSDPCSGRIF VELQNGTWRV IDSEKEFDAL LSSLDSRGIR ESHLRLMLKK IEMSFKDTVR  1200
TSLQSSKSME EEVSLRDSSP NCSAGTESPS SLVCGTNSNL HDVFSLFRIE IGRNEREKRG  1260
VLRRYQDLQM WIWKESLSPT ASCAMKFGKK RSRQLLDACD SCLDSYASED CHCIFCHQTF  1320
GGGNFDFGEH EAICSKRSKP DPTDACGSNP SLPLGINLLK ALLASIEAFV PAEALESFWT  1380
ESHRKSWSRR LAALSSIEEL LQMLSAFESA IKPDFLSPNY ESTKELLGIT TLNEKSDLAS  1440
VRVLPWIPRT MSAVALRLFE LDASIIYVKQ EKDMPSDDNL DTLVTKQHQA YSLVEQENFK  1500
EEVAVNPPSK SNVGKRRRVK SNLGRVSKKQ RRRTPTHRPP SQTSSRKSQA ANNQRQGIVA  1560
ASRREVNIQE PSRGPRTVRK RRPESVNARG EQFIGHATER MPPPKGRFNE ESYETRRMQV  1620
DKSEDSSSGS DSGSSSAESD EDAAALAEES DDNAAEEEDD NAAEEEGYEQ PEAWNRGFDA  1680
GGKSNSNGWR ENSVEGSDQE DQEGASSDAA ASGDENRNGV EDEEMVEEED SGNEEMSDGS  1740
GEEGEDDDKV ARNSDDARDS DDSGEDDKVA RNDDAGDSDD SGESDEYSSN E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18289RRLKDRRE
215141518KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015325
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509429.10.0homeobox-DDT domain protein RLT1 isoform X1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLB9RB950.0B9RB95_RICCO; Homeobox protein, putative
STRINGLus100153250.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1