PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10015229

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WRKY

Protein Properties

Length: 266aa MW: 29361.8 Da PI: 5.632

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10015229	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.7	2.8e-29	66	123	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C+s gCp++k+vers+ dp+++++tY+++Hnh+ Lus10015229 66 DSWAWRKYGQKPIKGSPYPRGYYKCSSWkGCPARKQVERSRVDPTTLVVTYSSDHNHP 123 99**********************988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.9E-30	59	124	IPR003657	WRKY domain
SMART	SM00774	3.4E-33	64	124	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-24	64	124	IPR003657	WRKY domain
PROSITE profile	PS50811	30.044	66	125	IPR003657	WRKY domain
Pfam	PF03106	1.9E-24	66	123	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MEDDEEHDNT TGSGPDGMKL TSTTSSPKPS KRGLRKRVVS IPIKEVEGVS SSCRLKGSEI 60 SSPPLDSWAW RKYGQKPIKG SPYPRGYYKC SSWKGCPARK QVERSRVDPT TLVVTYSSDH 120 NHPSAPPPPT RPHHHNPKLA AVDPDTPPAN PEPEPNPDRE RFANFEDEFS WFGEMEATSS 180 SAILDTPLLV AVDVEMFSSL DVFLPMREED DESLFADLGE LPECTSVFRH HRGMGTEGGV 240 TVGWERRCRS ADRTAGCLLL IGSWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-17	60	123	9	77	Disease resistance protein RRS1
5w3x_D	1e-17	60	123	9	77	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10015229

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021685996.1	2e-78	probable WRKY transcription factor 65
Swissprot	Q9LP56	2e-61	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A0U1VMX9	6e-76	A0A0U1VMX9_HEVBR; WRKY super family protein
STRING	Lus10015229	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	3e-55	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	Lus10015229

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]