PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015156
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 432aa    MW: 47006.5 Da    PI: 8.3578
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015156genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-085984126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C +++r+G C y ++C+++H+
  Lus10015156 59 PGEPDCIYYLRNGVCGYASNCRYNHP 84
                 5789*********************8 PP
2zf-CCCH34.92.6e-11108132327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C ++++tGtCkyG +C+++H++
  Lus10015156 108 EPDCGYYLKTGTCKYGTTCRYHHPK 132
                  789********************96 PP
3zf-CCCH40.16.1e-13152177227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+f++rtG Ck+G+ CkF+H++
  Lus10015156 152 DEKPCSFYMRTGSCKFGGACKFHHPQ 177
                  5789********************97 PP
4zf-CCCH36.39.2e-12283307327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++Cr+f+ tGtC+yG+ Ck++H++
  Lus10015156 283 QPECRHFMNTGTCRYGSDCKYHHPK 307
                  689********************96 PP
5zf-CCCH32.61.4e-10327353127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC+++  +G+Ck+G +C+F H++
  Lus10015156 327 PGQALCPNYITYGICKFGTSCRFDHPF 353
                  5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00135885IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6525886IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-56084IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-56386IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004105133IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4105132IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8108132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6110133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-6149178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375150178IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10152177IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6152177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4154176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.976280308IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-5280307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-7281309IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9283307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-6286312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418326354IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4326353IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-7328353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5329354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4331351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MPDTNISGSN QKQQVKSNGG SNQSSDNIDE AIRRLKIQEN QDQNGGGDVT EPGSYPDRPG  60
EPDCIYYLRN GVCGYASNCR YNHPNQHAPP VAKGSQGGDQ ELPERAGEPD CGYYLKTGTC  120
KYGTTCRYHH PKDRNGAEPV LYNLLGLPMR QDEKPCSFYM RTGSCKFGGA CKFHHPQPPA  180
AAAPLEPAGI PFSGLGSTGS QMIPRLPYMS APPPRFDSTP AAFAPVYISP PSQGGWNTYG  240
NLSPMASPPS IFGSNLVFNM ARNQGGSGMY MPSYSLLPQR VDQPECRHFM NTGTCRYGSD  300
CKYHHPKERR TPPLLTINAA PGLPSRPGQA LCPNYITYGI CKFGTSCRFD HPFTGYPYNY  360
SFTIPPPLPM LDSSMVTSYP RMVTSSPSYN FNGAARNIKQ QHQMNNAGTN NKKTTAPSPT  420
PTTPPDETTT D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015156
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528968.11e-144zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLB9SSJ91e-142B9SSJ9_RICCO; Zinc finger protein, putative
STRINGLus100151560.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.24e-96C3H family protein