PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10015058

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NF-YB

Protein Properties

Length: 180aa MW: 19319.2 Da PI: 5.984

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10015058	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	179.1	4e-56	30	124	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrflPian++rimkk+lPan+ki+kd+ketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkvyl++yre ++ Lus10015058 30 VREQDRFLPIANIGRIMKKALPANGKIAKDSKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREGDT 124 69*****************************************************************************************9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.2E-54	26	143	IPR009072	Histone-fold
SuperFamily	SSF47113	4.49E-40	33	149	IPR009072	Histone-fold
Pfam	PF00808	1.2E-27	36	100	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.0E-21	64	82	No hit	No description
PROSITE pattern	PS00685	0	67	83	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.0E-21	83	101	No hit	No description
PRINTS	PR00615	3.0E-21	102	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MSSAADAGSP GGGGGSHDSG GDQSPRSSNV REQDRFLPIA NIGRIMKKAL PANGKIAKDS 60 KETVQECVSE FISFITSEAS DKCQREKRKT INGDDLLWAM ATLGFEDYIE PLKVYLARYR 120 EGDTKGSSSS AKGGDTSARK DGQQPNSNGQ NFIPAQGVSY GNPQDYRNYG MNDVQLDRQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-48	29	121	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10015058

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620315.1	1e-83	PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2
Refseq	XP_016449856.1	1e-83	PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X3
Swissprot	Q8VYK4	7e-80	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A1S3YC89	3e-82	A0A1S3YC89_TOBAC; nuclear transcription factor Y subunit B-10-like isoform X3
STRING	Lus10015058	1e-130	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2545	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	1e-73	nuclear factor Y, subunit B8

Link Out ? help Back to Top
Phytozome	Lus10015058

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]