PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10014974

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 579aa MW: 65464.3 Da PI: 7.6405

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10014974	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.0009	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rH r+H Lus10014974 77 KCDKCSREFCSSINYRRHVRVH 98 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.305	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MPVVKQKAGN TTDVMKSEEG NDSLDTFIRQ AMGKEPLLSF PRTNDNPVQW IQLLQALDQQ 60 DGPGWPLLTP LKVQMQKCDK CSREFCSSIN YRRHVRVHHR LKKLDKDTTK IRNLLDAFWE 120 KLSEDEAKEI LSFKDVALEE VSGSSIIKSL MALNRKQGLC PLPQYCLRAG TALLDLIQGR 180 FLYPLSSEEL FSILDDASEK MFLCGAAISM EKYIFEGEAA KNGLETKNIV ACTSFLVEQK 240 LVKAWLADKD AEALRCQKLL VEEEEAAQRR QAELLERKRL KKLRQKEQRA KEHQQEAKPD 300 TLEEPAELPC STACSSNSHD MEIPADPFSS SSEPIQLADI EDGDFDLEGQ IGYSNGGGAG 360 RIYYPAMGNY RGGRWPQKLQ WNSHTPNGFL RKWSRKNRVV EYGWETSIPR TEKLVINQQQ 420 PEDDHAKKRE VLIGSISVAL CSEDSNDREV ERKNSRGTVK QWRPVSRKGT KGQAQEDEFA 480 PRESSPDENL RPSRFQFSCQ AAKAFLAERW KEAMAAEHVK LVLTLDSGTY LQRNGNVEET 540 LVHESSSSIS IGGGKEFLRG KPEKGVKLKY IPKQRTLS*

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MPVVKQKAGN TTDVMKSEEG NDSLDTFIRQ AMGKEPLLSF PRTNDNPVQW IQLLQALDQQ  60
DGPGWPLLTP LKVQMQKCDK CSREFCSSIN YRRHVRVHHR LKKLDKDTTK IRNLLDAFWE  120
KLSEDEAKEI LSFKDVALEE VSGSSIIKSL MALNRKQGLC PLPQYCLRAG TALLDLIQGR  180
FLYPLSSEEL FSILDDASEK MFLCGAAISM EKYIFEGEAA KNGLETKNIV ACTSFLVEQK  240
LVKAWLADKD AEALRCQKLL VEEEEAAQRR QAELLERKRL KKLRQKEQRA KEHQQEAKPD  300
TLEEPAELPC STACSSNSHD MEIPADPFSS SSEPIQLADI EDGDFDLEGQ IGYSNGGGAG  360
RIYYPAMGNY RGGRWPQKLQ WNSHTPNGFL RKWSRKNRVV EYGWETSIPR TEKLVINQQQ  420
PEDDHAKKRE VLIGSISVAL CSEDSNDREV ERKNSRGTVK QWRPVSRKGT KGQAQEDEFA  480
PRESSPDENL RPSRFQFSCQ AAKAFLAERW KEAMAAEHVK LVLTLDSGTY LQRNGNVEET  540
LVHESSSSIS IGGGKEFLRG KPEKGVKLKY IPKQRTLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	282	ERKRLKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10014974

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012090229.1	0.0	uncharacterized protein LOC105648450 isoform X1
TrEMBL	A0A067JEM2	0.0	A0A067JEM2_JATCU; Uncharacterized protein
STRING	Lus10014974	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4517	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-124	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Lus10014974