PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014914
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 457aa    MW: 50068 Da    PI: 8.0263
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014914genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.6e-07184203525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +C ++a+ G+Ck G++CkF H
  Lus10014914 184 PCLYYAK-GFCKNGATCKFLH 203
                  8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.183179206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5182204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4183204IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-5184203IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDSYEATKTV FSRIQAMDPD NASKIMGYLL LQDQGDNEMI RLAFGPESLL HNLILQAKSH  60
LGLPISPTNS SSSSSSSNSN PSTPSSPFLS SPRPRISSSS LSYAGNQSGH SQNGNGVGSF  120
PYGDLGDGDH QYSFLNESGK HADQLFDKIP DSALFSPTGD ATSHFHRRSY SVPGVNFAAD  180
GWKPCLYYAK GFCKNGATCK FLHHGGGSDR RPRERSLWGG GPTQRLYPET VNLILAKGNP  240
HFVCDSRVLV KPYKEKGKIL EKKQMERGGE FSPSACSSPT GLDSRDPFDL QLGSRMFYNT  300
QEMLLRKKLG EQADLQQAIE LHGRRLMSLQ LLDLKNHHRQ QLIHGLSNGS PLSSPRTPVL  360
PVPEENGFGA VVGHDQEKYF TELNDLHESF EHILPENLFN SPKKASLDHH KTAFPASLEL  420
HDTNSTNSAI NMTPLKSFPQ MTRLSSGHGT IGMKSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014914
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615462.12e-75zinc finger CCCH domain-containing protein 22-like isoform X1
STRINGLus100149140.0(Linum usitatissimum)