PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014745
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 357aa    MW: 39703.8 Da    PI: 10.3232
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014745genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.3e-31289346359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Lus10014745 289 DDFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 346
                  99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.5E-18240285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.7E-33275347IPR003657WRKY domain
PROSITE profilePS5081129.631282348IPR003657WRKY domain
SuperFamilySSF1182907.19E-27285347IPR003657WRKY domain
SMARTSM007742.2E-38287347IPR003657WRKY domain
PfamPF031066.3E-27289346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEEVEAANRA AVESCNRVLN LLNQPQQEQV HYRNLMVETG EAVFKFKKVV SLLNTGLGHA  60
RVRKIKTLPS SLSHNILLDN PYQHTRADQP SKSYQFIKSS GYLETGSSSA AKTALCLGNS  120
SSLELSSSSN GKSPFQLVQQ TGHFQLLQQQ QLQRMQLQQR QQQQQQMKLQ QADMIFRRSN  180
SGISLNFDSS SCTPTMSSTR SFMSSLSIDG SVTNMDGSAF GLMGAPRSSD QSSQQQQHHK  240
RKCSARGEDG SVKCGSTGRC HCSKKRKHRV KRSIKVPAIS NKLADIPPDD FSWRKYGQKP  300
IKGSPHPRGY YKCSSMRGCP ARKHVERCLE EPSMLIVTYE GEHNHPRIPT QSANTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-202833491075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014745
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8304561e-109EU830456.1 Linum usitatissimum clone LU0017D02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520995.10.0probable WRKY transcription factor 21
SwissprotO043361e-123WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLB9S4T80.0B9S4T8_RICCO; WRKY transcription factor, putative
STRINGLus100147450.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-82WRKY DNA-binding protein 21