PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014490
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 522aa    MW: 59850 Da    PI: 5.7424
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014490genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH223e-0789109425
                  ---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                  ++C f+++ G+C+ Gd+C+F H
  Lus10014490  89 VPCYFYFQ-GFCSKGDTCTFLH 109
                  69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.549635IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019734IPR000571Zinc finger, CCCH-type
PfamPF156631.9E-11764No hitNo description
PROSITE profilePS5010310.3713763IPR000571Zinc finger, CCCH-type
SMARTSM003560.63962IPR000571Zinc finger, CCCH-type
SMARTSM003560.00285111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-685110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.67185112IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-589110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-490111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEEELLKRNT DCVYFLASPL TCKKGAECEY RHSDMARLNP RDCWYWLSGS CLNPTCAFRH  60
PPLENTTEGP SESGLVPSQV NQSTNKNAVP CYFYFQGFCS KGDTCTFLHA PHGSTSTAKS  120
VKMPSTNSDG HPVNSSQSSG SKTALAPTEV QNNLPTTAQK PSVDVKLQSK EEMRQQAPDV  180
EVQKSSPLQI AETNDEEACV FGTDTLLTLE SYNEDISYMS SDLNSEDYAD DHIEQEPRES  240
SPGFDVLVDN EEGENLCYED EQDYVVSLDR EQRVVDNQFV EYNFEEPDEY VRLGFSQRRE  300
LDLRDHLRKH RAVDGEQLIS RSMRRRESSL VYEPYHLSRG SHDKQYEHGL NEQNRRSHER  360
PYKHGVSRRI KENHGRRYEQ GPSERLHGRL VCDVGRTSIE FVNGYGICGN FASECGWMKH  420
LQFDRSMLHR KRRDHRRYCV PYEFGGRPVG RERRSSEEGR GEFSRPKSLS QIREEKRRCD  480
QNGYSIERDE DMTGTESAAS NFEGPKPLNE ILKDKKKLVE V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100144900.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823