PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10014429

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Nin-like

Protein Properties

Length: 331aa MW: 38064.7 Da PI: 5.4508

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10014429	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.2	1.6e-28	145	195	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e++isl++l+ yF++++kdAAke+gvc+T+LKriCRq+GIkRWP+Rkik++ Lus10014429 145 EQKISLQMLRGYFAGSLKDAAKEIGVCATTLKRICRQHGIKRWPSRKIKKV 195 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.598	131	215	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-24	148	195	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.57E-17	242	329	No hit	No description
SMART	SM00666	3.1E-17	244	330	IPR000270	PB1 domain
PROSITE profile	PS51745	17.797	244	330	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.7E-18	245	327	No hit	No description
Pfam	PF00564	6.5E-13	245	329	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MDADSFTPFP DFNQFASSSP DSINWDFVHE SLLYQDYSWF DEIDSCFDLI PQPDLHLLPV 60 HTVQEEAIKP TSETPNSGKE ETNLNFSWDC VPKEELGEEG FKVLTHWEDH EPPEMEFESQ 120 KGILIGWSTT QQSKSRKKKR AGKMEQKISL QMLRGYFAGS LKDAAKEIGV CATTLKRICR 180 QHGIKRWPSR KIKKVDHSLK KLQRVIDSVH EGAQIGSFYS DFPQLNTTTS SEETSKAEVD 240 DRTIFRVKAR LGDENVRLVM NPSWGVRELK QEIGKRFGVQ DAVELGFVGF RYMDEDSEWV 300 HLSCDDDLQD CKEMHRFSDR NAIRISLHHT *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10014429

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025981135.1	8e-59	protein NLP2
TrEMBL	A0A371EY90	3e-62	A0A371EY90_MUCPR; Protein NLP2 (Fragment)
STRING	Lus10014429	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22736	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	1e-33	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Lus10014429