PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014428
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Nin-like
Protein Properties Length: 807aa    MW: 90692.7 Da    PI: 6.9917
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014428genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.14.1e-29529579252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRqyGI+RWP+Rkik++
  Lus10014428 529 EKTVSLDVLRQYFAGSLKDAAKSLGVCPTTLKRICRQYGINRWPSRKIKKV 579
                  799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.541513599IPR003035RWP-RK domain
PfamPF020423.3E-25531579IPR003035RWP-RK domain
SuperFamilySSF542773.36E-22710799No hitNo description
Gene3DG3DSA:3.10.20.2402.6E-21712795No hitNo description
SMARTSM006669.8E-22713798IPR000270PB1 domain
PROSITE profilePS5174522.973713798IPR000270PB1 domain
CDDcd064074.94E-36714796No hitNo description
PfamPF005641.6E-17714796IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MDHDGGGAFT PNSTFENLIS SSTMDLDPSM DQIFDERCWM GTPPDGFSFL SQPCPPTSLI  60
IPELQHHGPN PHQDINFQGG GYENREVIPP SIKDRLEYAI RKLKEYTDPR DVLVQIWVPI  120
TKGGKHLLTT KDQPYFITPE CMNLASYRNV SKEYHFGADL DSQVLVGLPG RVFLGKFPEW  180
TPDVRYFKPE EYPRQSYAAQ YSISGSLAFP VFERGNWTCL GVVEVITTTR DIQYRPELEN  240
VCKALEAVDL SSSVDFIPPS MKGCKEFCEA AVPELLDILA SVCKTHRLPL ALTWAPCFQQ  300
GKGGCRHFDE SYARYISTVD AARFVADTEL WAFLAACSEQ YLFLGQGLVG KAFTMNKQCF  360
EPNVSALSKA AYPLSHHAMV VGLQAAIAIP LQSSTTGFVL ELFLPKDCQD PGEQNKLRDM  420
LPLTVQQASR SLRVVMEREE LEEWRSFQPV KKTSHEEPSS WISQFMEVQP KSNDTFSFSR  480
ECLKKEPQEE FKVTWENNQR EVNHNTLVST EHASSSIRRM SEKRRTKTEK TVSLDVLRQY  540
FAGSLKDAAK SLGVCPTTLK RICRQYGINR WPSRKIKKVG HTLKKLQLVI DSVQGADGAI  600
QIGSFYTTFP DLTSPNHSGN VHRQQVAHAQ PERNTNTSKS ASTSSSQSSG CSSCYSAGAE  660
LKRTRSDAEL LVLNHDYEAH PLLARSQSHR LLLGGGDSGF HKPGCRKLRD GSDFRVKASF  720
GADKVRFSLP SSWGFKEFKQ EVMNKFNVGE YGACRVDLKY LDDDQEWVLL TCDDDLEECK  780
DVYRSEQRHT IKLSLHMKPG AVPAMN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014428
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690600.10.0protein NLP2-like
RefseqXP_021690601.10.0protein NLP2-like
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLU5GKC20.0U5GKC2_POPTR; Uncharacterized protein
STRINGLus100144280.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein