PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10014380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRF | ||||||||
Protein Properties | Length: 244aa MW: 27641.6 Da PI: 9.5631 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.5 | 3e-25 | 143 | 186 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v+ ++k+CErH+hrgr+rsrk++e Lus10014380 143 DPEPGRCRRTDGKKWRCSRDVVVNQKYCERHVHRGRNRSRKPVE 186 79***************************************998 PP | |||||||
2 | QLQ | 52.6 | 1.4e-18 | 70 | 106 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+y+y++a++ vPp+Ll +i+k Lus10014380 70 SYFSLAQWQELELQALIYRYMLAGASVPPQLLHPIKK 106 79*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.8E-10 | 70 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.1E-13 | 71 | 104 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.36 | 71 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.995 | 143 | 187 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-21 | 144 | 186 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDFHLKQWRN QHESEEEEQQ QQHNNLKMLL HPSSADDDNL QNPSAADAAA LPLFADSSTT 60 RFPTTRMGIS YFSLAQWQEL ELQALIYRYM LAGASVPPQL LHPIKKSLLL HTSSSPPSYF 120 LHNYPYPPSS LMQAGYWGRA AMDPEPGRCR RTDGKKWRCS RDVVVNQKYC ERHVHRGRNR 180 SRKPVEVTTP AARGGGFTPF FIARLAPAPF RSGPVLLDFL VLQEGKELQL QLICFTVIKG 240 KPL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10014380 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019246611.1 | 1e-74 | PREDICTED: growth-regulating factor 3-like | ||||
Refseq | XP_028784769.1 | 3e-75 | growth-regulating factor 3-like isoform X1 | ||||
Swissprot | Q8L8A7 | 8e-54 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | A0A1J6J7F4 | 2e-73 | A0A1J6J7F4_NICAT; Growth-regulating factor 3 | ||||
STRING | Lus10014380 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7895 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 5e-39 | growth-regulating factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Lus10014380 |
Publications ? help Back to Top | |||
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