PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014376
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 217aa    MW: 23022.3 Da    PI: 8.7723
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014376genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.8e-181060155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Lus10014376 10 PSYRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFPTPEMAAVAYDVAALALKG 60
                 57*****888.8*********94....468***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-111060IPR001471AP2/ERF domain
SMARTSM003807.3E-361174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-301170IPR001471AP2/ERF domain
PROSITE profilePS5103223.0371168IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-201169IPR016177DNA-binding domain
PRINTSPR003678.6E-111223IPR001471AP2/ERF domain
CDDcd000181.53E-301370No hitNo description
PRINTSPR003678.6E-115070IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MQPSQQQQYP SYRGVRRRSS GKWVSEIREP KKPNRIWLGT FPTPEMAAVA YDVAALALKG  60
RDAKVNFPNS SASLPVPAST SPRDIQAAAA SAAAAIGAAR DALGINVMTN GNFGGGAGGN  120
QTVLTLQANN DYFSSSSFVD EDLIFDMPNI LMNMAEGMML SPPRFGGGAG AHDGYGYGYG  180
YGGGGXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-148701174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014376
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066511.12e-67ethylene-responsive transcription factor ERF024
SwissprotQ9SJR02e-51ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A067L2P05e-66A0A067L2P0_JATCU; Uncharacterized protein
STRINGLus100143761e-131(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.17e-37ERF family protein