PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014331
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family EIL
Protein Properties Length: 488aa    MW: 54141.6 Da    PI: 5.0592
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014331genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3360.14e-110272901257
                  XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.............XXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaa............tgakksn.....ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekg 81 
                  +elkkrmwkd+ +l+ l+e++ + + +++ +            t     +       +e++rrkkm+raQD+iLkYM+k+mevcn +GfvYgiipekg
  Lus10014331  27 DELKKRMWKDRLRLQELQEKRGKMMMNNNGSkpnnkeeaqgetT-----SsssspVKQEASRRKKMARAQDSILKYMVKIMEVCNGRGFVYGIIPEKG 119
                  79*******************99987777765555555554433.....045555899**************************************** PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--H CS
         EIN3  82 kpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkel 179
                  kpv+g+sdsLr+WWk+ v+fd++++ a+++      ++       +     +++l+elqDTtlgSL salmqhc ppqrrfple+g++pPWWPtG+e 
  Lus10014331 120 KPVSGSSDSLRHWWKDSVRFDQTATQALIQFHTSSPAS------AVLDHPAPNRLHELQDTTLGSLISALMQHCVPPQRRFPLERGLPPPWWPTGNEI 211
                  ****************************9884333332......23477899********************************************** PP

                  HHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S CS
         EIN3 180 wwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekec 257
                  ww+ +g + +d+g+ppy+kphdlkkawk+s+Ltav+khm+p++ ++r+l+r sk+lqdkm+ake+++++ v++qee+e+
  Lus10014331 212 WWEGQGsATTDHGPPPYRKPHDLKKAWKLSLLTAVMKHMAPDFHRMRRLVRHSKCLQDKMTAKETAIWSTVVSQEEEEA 290
                  ******999******************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.0E-11227287No hitNo description
Gene3DG3DSA:1.10.3180.108.5E-65163289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167686.41E-57166289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDPSTSELIP AEQEELQLEE DDSTIYDELK KRMWKDRLRL QELQEKRGKM MMNNNGSKPN  60
NKEEAQGETT SSSSSPVKQE ASRRKKMARA QDSILKYMVK IMEVCNGRGF VYGIIPEKGK  120
PVSGSSDSLR HWWKDSVRFD QTATQALIQF HTSSPASAVL DHPAPNRLHE LQDTTLGSLI  180
SALMQHCVPP QRRFPLERGL PPPWWPTGNE IWWEGQGSAT TDHGPPPYRK PHDLKKAWKL  240
SLLTAVMKHM APDFHRMRRL VRHSKCLQDK MTAKETAIWS TVVSQEEEEA LIGRQLTKSV  300
RISELASTPS AEKRKKSSSD TEAEQADLMY SCRNQSCPQS KPGLGFIDKN ARSDHQLDCA  360
YPEKVIVQDI LEIDSESSDI DEGEDGGGPK QVIVPAGSEL SVTDWANMVL ESANVLEKGE  420
SSDGMEGLGL EETTGFDEMH HRGDIEFDLN LYPSSDDHGG SGVDAAAAAA AAASIWDLGY  480
VEPTSPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A8e-571652903127Protein ETHYLENE INSENSITIVE 3
4zds_B8e-571652903127Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014331
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632559.11e-134putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-115EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A2C9US901e-133A0A2C9US90_MANES; Uncharacterized protein
STRINGLus100143310.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32234200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-117EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]